PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4324
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 770aa    MW: 83815.7 Da    PI: 5.7544
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4324genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-20105160156
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Tp57577_TGAC_v2_mRNA4324 105 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 160
                               688999***********************************************999 PP
2START223.37.7e-702965151206
                               HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS
                     START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla 77 
                               ela +a++el+ +a+ ++p+W +     +++n++e++++f+++ +     ++ ea+r++ vv+m++++lve+l+d++ qW++ + 
  Tp57577_TGAC_v2_mRNA4324 296 ELAVAAMEELIGMAQMGDPLWLTTLeggSILNEEEYVRSFPRGIGpkpagFKCEASRETSVVIMNHVNLVEILMDVN-QWSTVFS 379
                               57899*************************************999********************************.******* PP

                               ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEE CS
                     START  78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSg 151
                                   +a+tlev+s+g      galq+m+aelq++splvp R+++fvRy++q+++g+w++vdvS+d+ ++ p    ++R++++pSg
  Tp57577_TGAC_v2_mRNA4324 380 givsRAMTLEVLSTGvagnynGALQVMTAELQVPSPLVPtRESYFVRYCKQHSDGTWAVVDVSLDNLRPSP----SARCRRRPSG 460
                               *********************************************************************99....5********* PP

                               EEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                     START 152 iliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                               +li++++ng+skv+wvehv++++r +h+l+++lv+sg+a+gak+w atl+rqce+
  Tp57577_TGAC_v2_mRNA4324 461 CLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCER 515
                               *****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-2283160IPR009057Homeodomain-like
SuperFamilySSF466898.36E-2091163IPR009057Homeodomain-like
PROSITE profilePS5007116.989102162IPR001356Homeobox domain
SMARTSM003891.3E-19103166IPR001356Homeobox domain
CDDcd000862.27E-19105163No hitNo description
PfamPF000464.4E-18105160IPR001356Homeobox domain
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
PROSITE profilePS5084843.985287518IPR002913START domain
SuperFamilySSF559619.34E-36287517No hitNo description
CDDcd088755.82E-129291514No hitNo description
SMARTSM002344.1E-65296515IPR002913START domain
PfamPF018522.0E-58297515IPR002913START domain
Gene3DG3DSA:3.30.530.202.5E-5395510IPR023393START-like domain
SuperFamilySSF559611.76E-25535761No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MQTSLMIPAS NMPSIIGRNN NNVGVFGFSS SLSLGQPNLM EAGQQQHHHQ LLPFDMTTNN  60
NNTSESDVPR IREDELFDSA TKSGNSENQE AANSGDDQDQ PRAKKKRYHR HTQHQIQEME  120
AFFKECPHPD DKQRKELSRE LGLEPLQVKF WFQNKRTQMK TQQERHENTQ LRTENEKLRA  180
DNMRFREALS NASCPNCGGP TAIGEMSFDE HHLRLENARL REEIDRISGI AAKYVGKPVV  240
SYPLLSPSSV PPRPLELGIG GFGGQPGIGG GDMYGAGDLL RSISGPTEAD KPMIIELAVA  300
AMEELIGMAQ MGDPLWLTTL EGGSILNEEE YVRSFPRGIG PKPAGFKCEA SRETSVVIMN  360
HVNLVEILMD VNQWSTVFSG IVSRAMTLEV LSTGVAGNYN GALQVMTAEL QVPSPLVPTR  420
ESYFVRYCKQ HSDGTWAVVD VSLDNLRPSP SARCRRRPSG CLIQEMPNGY SKVIWVEHVE  480
VDDRGVHNLY KQLVSSGHAF GAKRWIATLD RQCERLASAM ATNIPTVDVG VITNQDGRKS  540
MLKLAERMCI SFCAGVSAST AHTWTTLSGT GADDVRVMTR KSVDDPGRPA GIVLSAATSF  600
WLPVTPKRVF EFLRDENSRS EWDILSNGGV VQEMAHIANG RDTGNCVSLL RVNSANSSQS  660
NMLILQESCT DTTGSFVIYA PVDIVAMNVV LNGGDPDYVA LLPSGFAILP DGGVGGENGN  720
GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN NLIACTVERI KASLSGEVA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4324
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631891.10.0homeobox-leucine zipper protein HDG2 isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A396JGY50.0A0A396JGY5_MEDTR; Putative transcription factor & lipid binding HD-SAD family
STRINGAES672500.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2