PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA4276 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 639aa MW: 73955.4 Da PI: 7.2395 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 43 | 1.5e-13 | 48 | 132 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY eYA + GF+ ++++s+k ++gei + C++eg++ ++ + +t ++ +C ak+ +k+e dg w+++k++ +H Tp57577_TGAC_v2_mRNA4276 48 SFYGEYALRKGFRWKIRTSRKG-QDGEINYVILACTREGSTVSKVPC---TLKTLPTRVDHCPAKICIKMEIDGLWYIKKFVPDH 128 59****************9998.8999*************9998766...66777777779************************ PP FAR1 86 nHel 89 +He Tp57577_TGAC_v2_mRNA4276 129 SHET 132 **85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.2E-11 | 48 | 132 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.2E-33 | 235 | 329 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.742 | 521 | 557 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.002 | 532 | 559 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 9.4E-5 | 533 | 554 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 639 aa Download sequence Send to blast |
MDSSNNMVDC GGSLHEFIEI VDKFKDDGVA CWEPAMDMCF SSMDDAKSFY GEYALRKGFR 60 WKIRTSRKGQ DGEINYVILA CTREGSTVSK VPCTLKTLPT RVDHCPAKIC IKMEIDGLWY 120 IKKFVPDHSH ETIPTKARLF KANKKMKRTI EINDDAGGHE NISFCERDVK NYVNQERRAL 180 GKEGDSKAMM SYFCEMRERN SNFFYDLDLD DDFHVKNVFW ADARSRAAYE YFGDVVTFDT 240 TYLTNKYDMS FVLFVGVNHH GQSTLLGCGL LSGEDTESFI WLFKSWLRCM LGKAPIGIIT 300 DQCKAMQNAI ELVFPTTCHR WCLRNIMKKI PKKLNGCNEY KKIKDAMEEA VYDTYTTTAL 360 EEKWCSFIDK FELQQNNWLS ELYNERHRWA PTLLRKYFWA GMSTMQRSES GHAAFFDGYI 420 KSTTSLSQFL KQYDNALISR AEKEFEADFN SMDTTIPCGS TSSIEKQFQG EYTHSKFKEL 480 QVEFRSKMNC VASLNIVEGC LATYHVLEDV VVGDQTKEIV FKVVFNKENH DFSCECSLFE 540 FRGILCRHVL SVCAHERIIN VPKKYVLTRW KKNIKRKHSY VKNSYSVAQL NPQMERFDTL 600 NKHFYYVAEA AAESEVVTKT LHETLHQFSS NLPHLMEV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA4276 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024642224.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2K3NGJ6 | 0.0 | A0A2K3NGJ6_TRIPR; Protein FAR1-related sequence 6-like | ||||
STRING | GLYMA11G13523.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 1e-106 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA4276 |