PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4276
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 639aa    MW: 73955.4 Da    PI: 7.2395
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4276genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1431.5e-1348132189
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                               +fY eYA + GF+ ++++s+k  ++gei    + C++eg++ ++      + +t ++   +C ak+ +k+e dg w+++k++ +H
  Tp57577_TGAC_v2_mRNA4276  48 SFYGEYALRKGFRWKIRTSRKG-QDGEINYVILACTREGSTVSKVPC---TLKTLPTRVDHCPAKICIKMEIDGLWYIKKFVPDH 128
                               59****************9998.8999*************9998766...66777777779************************ PP

                      FAR1  86 nHel 89 
                               +He 
  Tp57577_TGAC_v2_mRNA4276 129 SHET 132
                               **85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-1148132IPR004330FAR1 DNA binding domain
PfamPF105513.2E-33235329IPR018289MULE transposase domain
PROSITE profilePS509669.742521557IPR007527Zinc finger, SWIM-type
SMARTSM005750.002532559IPR006564Zinc finger, PMZ-type
PfamPF044349.4E-5533554IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MDSSNNMVDC GGSLHEFIEI VDKFKDDGVA CWEPAMDMCF SSMDDAKSFY GEYALRKGFR  60
WKIRTSRKGQ DGEINYVILA CTREGSTVSK VPCTLKTLPT RVDHCPAKIC IKMEIDGLWY  120
IKKFVPDHSH ETIPTKARLF KANKKMKRTI EINDDAGGHE NISFCERDVK NYVNQERRAL  180
GKEGDSKAMM SYFCEMRERN SNFFYDLDLD DDFHVKNVFW ADARSRAAYE YFGDVVTFDT  240
TYLTNKYDMS FVLFVGVNHH GQSTLLGCGL LSGEDTESFI WLFKSWLRCM LGKAPIGIIT  300
DQCKAMQNAI ELVFPTTCHR WCLRNIMKKI PKKLNGCNEY KKIKDAMEEA VYDTYTTTAL  360
EEKWCSFIDK FELQQNNWLS ELYNERHRWA PTLLRKYFWA GMSTMQRSES GHAAFFDGYI  420
KSTTSLSQFL KQYDNALISR AEKEFEADFN SMDTTIPCGS TSSIEKQFQG EYTHSKFKEL  480
QVEFRSKMNC VASLNIVEGC LATYHVLEDV VVGDQTKEIV FKVVFNKENH DFSCECSLFE  540
FRGILCRHVL SVCAHERIIN VPKKYVLTRW KKNIKRKHSY VKNSYSVAQL NPQMERFDTL  600
NKHFYYVAEA AAESEVVTKT LHETLHQFSS NLPHLMEV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4276
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024642224.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K3NGJ60.0A0A2K3NGJ6_TRIPR; Protein FAR1-related sequence 6-like
STRINGGLYMA11G13523.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-106FAR1 family protein