PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4246
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family SBP
Protein Properties Length: 1041aa    MW: 114248 Da    PI: 6.1964
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4246genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.61e-39183259278
                               -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                       SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                               Cqve+C+adl++ k+yhrrhkvCe+hska+++lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Tp57577_TGAC_v2_mRNA4246 183 CQVEDCRADLNNGKDYHRRHKVCEIHSKASKALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNQ 259
                               **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.5E-32175244IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.718180257IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.79E-37181261IPR004333Transcription factor, SBP-box
PfamPF031101.7E-28183256IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.204.2E-7338353IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.2E-7387388IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.7E-6810926IPR020683Ankyrin repeat-containing domain
CDDcd002041.18E-6814925No hitNo description
Gene3DG3DSA:1.25.40.204.2E-7814928IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1041 aa     Download sequence    Send to blast
MFVVQVKTYN STIPIGFHSF FHTIISILTA YGEKIRLXXX XXXXXXXXXX XXXXXXXLFI  60
ATTKLTPVPE HRQFLPLPVG ASDGGGGGGG GGSSNSNSSS SCSEQLDLGI CQGNKEGERK  120
RRVIVVEDDE LGLNKEGASL SLNLGGGGGG SGSGVQVAAT WEGNIGKKSR VAAGGGSSSR  180
AFCQVEDCRA DLNNGKDYHR RHKVCEIHSK ASKALVGNAM QRFCQQCSRF HLLQEFDEGK  240
RSCRRRLAGH NKRRRKTNQD AVPNGSSPSD DQTSSYLLIS LLKILSNMQP DMSNQTADQD  300
LLTHLLRSLA NQNGGQGGRN LSNLLREPEN LLKEGSSSGK SEMVSTLLTN GSQGSPTVTV  360
QNQAVSISEI QHQVVDAHDA RVADQQTTSS AKPSVSNSPP TYSEARDSTA GQAKMNDFDL  420
NDIYIDSDDG IEDIERLPVT ANIGTSSLDY PWMQQDSHQS SPPQTSGNSD SASAQSPSSS  480
TGEAQNRTDR IVFKLFGKEP SDFPLVIRAQ ILDWLSHSPT DIEGYIRPGC IVLTIYLRQA  540
EDVWEELCLD LTSSLNRLLD VSDDDFWRTG WVHIRVQHQM AFIFNGQVVI DTSLPFRCNN  600
YSKILSVSPI AVPASKTAQF SVKGINLTRP ATRLLCALEG DYLVCEDTHE SMDQCSKDLD  660
ELQCVQFSCS VPAMNGRGFI EIEDQGLSSS FFPFIVVEED VCSEICVLEP LLESSDTYPD  720
VEGAGKIQAK NQAMDFIHEM GWLLHRSQIK SRTVHLNSSV DLFPLDRFKW LVEFSVDHDW  780
CAVVKKLLNL MLEGTVSTGD HTSLYLALSE LGLLHRAVRR NSRQLVELLL RYVPQNVSDK  840
LGPEDKALVN GGNKNFLFRP DAAGPAGLTP LHIAAGKDGS EDVLDALTND PCMVGIEAWN  900
SVRDSTGSTP EDYARLRGHY TYIHLVQKKI NKRQGGAHVA VDIPSNLTMF DTSQKKDESS  960
TTFEIGNADV RSLQKNCKLC DRKLSCRTAV RKSFAYRPAM LSMVAIAAVC VCVALLFKSS  1020
PEVLYIFRPF RWESLEYGTS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-31176256484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4246
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626036.20.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLG7KUJ20.0G7KUJ2_MEDTR; Putative transcription factor SBP family
STRINGAES822540.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]