PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA42196
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 355aa    MW: 40572.5 Da    PI: 4.9898
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA42196genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.91.8e-0986144159
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetr 59 
                                +fY +Y+k+  Fsvrks+  ks  +ge  ++tf Cs  g++e++  + ++++rr+r etr
  Tp57577_TGAC_v2_mRNA42196  86 QFYTTYSKMYDFSVRKSNVVKS-SKGELLQQTFICSSAGYTENKGLNvDNRKRRERRETR 144
                                6*******************99.7788****************99996666777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.9E-786144IPR004330FAR1 DNA binding domain
PfamPF105512.4E-24280355IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
NNCQEDPEHI NEDVDESEDG DDSSEENFLE QNSEIGDDNC GDYVDSCEEE EIVIDDLDDI  60
LKIGMKNIVS NDVSRYYFSN LEVAYQFYTT YSKMYDFSVR KSNVVKSSKG ELLQQTFICS  120
SAGYTENKGL NVDNRKRRER RETRAMVVTL FTNEHNHEMV KDIYCQMLPG HKKITKADAL  180
VIHNHAKVGI RPSTTYGAFA HALGGYNKVQ FMKKDLYNQI GKQKRQQVSD ASAAVKYLKE  240
LKSKDPMMFV KFTTDSDKRL QHLFWVDGES QMNYKVFSDI VAFDATYRKN KYLCPLVIFS  300
GVNHHNQTIV FATGLVSNET EETYVWLLEQ FLEVMGGKAP SSVITDGDLA MKNAI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134141RKRRERRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA42196
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634529.11e-114protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2Z6NML71e-126A0A2Z6NML7_TRISU; Uncharacterized protein
STRINGGLYMA18G39530.21e-107(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3265734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-39FAR1-related sequence 5