PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA4206

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

TCP

Protein Properties

Length: 295aa MW: 31509 Da PI: 10.1009

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA4206	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.6	3.9e-37	63	227	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ s s +sn+ Tp57577_TGAC_v2_mRNA4206 63 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSsL--SVSLRGSNN 145 78**************************************************************9999976642..333333333 PP TCP 86 ssg..............................................................................k 89 s + + Tp57577_TGAC_v2_mRNA4206 146 SLPspsstslehkpllspspfilgkrirtdddsssssahakedalsvaslstpaalwalpsrpdfgqiwsfaaaaagapqpE 227 3334455566777777777777776666666555555555556666666666666666666666666666666666655432 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.1E-32	69	235	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	69	123	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MKSSVPSFSI THSHTLSFSL HPSTTLIPSL HPSIHQNMSN TDGTTTTTTT NGSIIDQNRQ 60 HLAVKKPPSK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI 120 IAATGTGTTP ASFSSLSVSL RGSNNSLPSP SSTSLEHKPL LSPSPFILGK RIRTDDDSSS 180 SSAHAKEDAL SVASLSTPAA LWALPSRPDF GQIWSFAAAA AGAPQPEMVI QSLSQQQQQQ 240 HQASFFSHHH HQQQQAMGEA SAARVGNYLP GHLNLLASLS GGHGNSGRGD DEHH*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA4206

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003592726.1	1e-122	transcription factor TCP7
Swissprot	Q9FMX2	1e-96	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2K3NXU1	0.0	A0A2K3NXU1_TRIPR; Transcription factor TCP7-like protein
STRING	AES62977	1e-122	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	6e-61	TCP family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA4206