PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA41982 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | Trihelix | ||||||||
Protein Properties | Length: 233aa MW: 26296.4 Da PI: 4.5857 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 68.2 | 1.7e-21 | 58 | 151 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 rWt+qe+l+Liea++ +e+ + + + p+W+ vs+ ++++g++r+++qC+++w nl ++++kik++e + ++es Tp57577_TGAC_v2_mRNA41982 58 RWTRQETLVLIEAKKVIENGDQVCRyrsstsglvQTDPKWDLVSSLCQQHGVKRGAVQCRKRWGNLLTDFRKIKKWETSIKNES 141 8**************9988777432334467788**********************************************9999 PP trihelix 76 sstcpyfdql 85 +s + + +++ Tp57577_TGAC_v2_mRNA41982 142 ESFWIMRNDV 151 9888887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.6E-11 | 57 | 147 | No hit | No description |
PROSITE profile | PS50090 | 6.655 | 58 | 124 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-6 | 58 | 125 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050777 | Biological Process | negative regulation of immune response | ||||
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MSEMNEPNSE KVCETIAEPN SEKVCETSAE SPTTPVGKQP EEAEPKSGER IKATRHPRWT 60 RQETLVLIEA KKVIENGDQV CRYRSSTSGL VQTDPKWDLV SSLCQQHGVK RGAVQCRKRW 120 GNLLTDFRKI KKWETSIKNE SESFWIMRND VRKENKLPGF FDSVVYNVLD GGVCTAAAFP 180 LTLIKMMPRA AENGDQVEGV AAIEQGNKED EIEEDEDEAI VDSEKMGWST EEE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00288 | DAP | Transfer from AT2G33550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA41982 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC126794 | 0.0 | AC126794.15 Medicago truncatula chromosome 4 clone mth2-24j7, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003630592.1 | 1e-134 | trihelix transcription factor ASR3 | ||||
Swissprot | Q8VZ20 | 2e-49 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | A0A2K3PKG9 | 1e-170 | A0A2K3PKG9_TRIPR; Trihelix transcription factor GT-2-like protein | ||||
STRING | AET05068 | 1e-133 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2165 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-51 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA41982 |
Publications ? help Back to Top | |||
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