PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA41794
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 297aa    MW: 34146.6 Da    PI: 9.8481
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA41794genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR186.34.7e-279100191
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 
                                +fYneY+k++GF +r+++ +ksk++g  t+r+f+C keg r  +k+++ + +r+raetrt+C+a++++++++  gk++v +++ 
  Tp57577_TGAC_v2_mRNA41794   9 DFYNEYSKKLGFGIRREYVNKSKKDGVLTSRKFTCFKEGIRGVDKRRQPTGERNRAETRTDCQARMVIRLDRkIGKYKVVDFVA 92 
                                6**********************************************99*********************9989********** PP

                       FAR1  84 eHnHelap 91 
                                +HnH+l+p
  Tp57577_TGAC_v2_mRNA41794  93 KHNHPLQP 100
                                *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-239100IPR004330FAR1 DNA binding domain
PfamPF105518.5E-21220295IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
FDSEAAAYDF YNEYSKKLGF GIRREYVNKS KKDGVLTSRK FTCFKEGIRG VDKRRQPTGE  60
RNRAETRTDC QARMVIRLDR KIGKYKVVDF VAKHNHPLQP QKYVHMIRSH RRISEAQASQ  120
IVLGDQSGLR PKGLHEYISK QAGGLETVGF TKQDLKNYLR TKRMHSLKFG EVGALIKYFK  180
HESENPSFFY DFQMDVDDEI TNIFWADAQM INDYGYFGDV ITFDTTYKTN KDYRPLGVFV  240
GLNNHRQTII FGAALLYDET IPSFQWLFET FLKAMGGAKP KTILTDQDAA MAKAXA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA41794
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027191736.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K3LW050.0A0A2K3LW05_TRIPR; Protein FAR1-related sequence 5-like (Fragment)
TrEMBLA0A3Q7Y2610.0A0A3Q7Y261_CICAR; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_004503202.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-73FAR1-related sequence 5