PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA41792 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | WRKY | ||||||||
Protein Properties | Length: 142aa MW: 16155.2 Da PI: 8.4602 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 35.5 | 2e-11 | 121 | 141 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 dDgy+WrKYGqK++k+s++pr Tp57577_TGAC_v2_mRNA41792 121 DDGYRWRKYGQKSIKNSPNPR 141 8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 12.886 | 115 | 141 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.8E-10 | 117 | 141 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-8 | 117 | 141 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-7 | 121 | 141 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MSKTMMEKIM TSNWSEGSEL LRNLLVDESN SLLMLPQGIV NEVTNTSHDD FSKDQDFNRF 60 ISNIYSGPTI SDIENALLVT NHSNHFQQIS STRVSILERS LSKIENKYTL KIKCFGNGMS 120 DDGYRWRKYG QKSIKNSPNP R* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA41792 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013448880.1 | 9e-80 | probable WRKY transcription factor 49 | ||||
Swissprot | Q9FHR7 | 5e-25 | WRK49_ARATH; Probable WRKY transcription factor 49 | ||||
TrEMBL | A0A072TZR7 | 2e-78 | A0A072TZR7_MEDTR; Putative transcription factor WRKY family | ||||
STRING | XP_004514387.1 | 3e-65 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7118 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 2e-27 | WRKY DNA-binding protein 49 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA41792 |