PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA41748 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | HRT-like | ||||||||
Protein Properties | Length: 244aa MW: 27778.8 Da PI: 10.0779 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 59.7 | 4.4e-19 | 197 | 227 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvil+dGs+C++ Pv++R RC eHKGmRi Tp57577_TGAC_v2_mRNA41748 197 VCGVILDDGSICTKLPVEKRVRCLEHKGMRI 227 7*****************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
LGREIFKLTS DPHRVVVVYL GKADNVRTRL QCYGRNGAHL GKGCYSFESS DHDQMGRSLF 60 HEIFFQGFPI VYRWAPMQTK GDALQTESQL LTTFDYAWNT INNGKRRPDD ILEMLNKITS 120 GARTRTISDV AKSLIPFTQK KVGIPIKSRK LPMTDNKSDE SDNGNYNFLS RVFKFNRLRP 180 KIVQDTTDCA FENHGKVCGV ILDDGSICTK LPVEKRVRCL EHKGMRINVI TAKAIRRSKS 240 ESET |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA41748 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003620925.1 | 1e-129 | protein EFFECTOR OF TRANSCRIPTION 2 | ||||
TrEMBL | A0A2K3MMR1 | 1e-180 | A0A2K3MMR1_TRIPR; Transcription factor | ||||
STRING | AES77143 | 1e-128 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9409 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 1e-48 | effector of transcription2 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA41748 |