PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA4173 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 156aa MW: 17376.6 Da PI: 12.0623 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.1 | 4e-08 | 37 | 79 | 3 | 45 |
SS-HHHHHHHH.HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellv.davkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eE++ + +++ g+ Wk I++ + k+Rt+ q+ s+ q Tp57577_TGAC_v2_mRNA4173 37 IWTEEEHKMFStRLIFIVKGK-WKQISKDFVKTRTPTQVASHAQ 79 6*********72566666666.********************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0025 | 34 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-5 | 34 | 81 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.8E-11 | 36 | 83 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.7E-8 | 37 | 79 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 1.76E-4 | 38 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MLRGILFSVR TKISATAGNP VSLILPSIRF VLVNEGIWTE EEHKMFSTRL IFIVKGKWKQ 60 ISKDFVKTRT PTQVASHAQG HSLPRSNQNL RHGGKPSVFD LTIHTVSGNK FLKTLSKLAH 120 QLKLQVMLRD ILFPVRTKIS ATVGNLVSLI LPSIR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA4173 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3213 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70000.2 | 3e-15 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA4173 |