PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA41714
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GeBP
Protein Properties Length: 261aa    MW: 30463.4 Da    PI: 10.1361
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA41714genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57347.16.9e-15661392398
                     DUF573  23 kaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                                k++tg +p +d +af+e +k+s+s+k + + l eK+r LK Kf k  ++  ++k+ +fs++ ++++fels+k Wg+
  Tp57577_TGAC_v2_mRNA41714  66 KSQTGNDPDKDFKAFHESLKDSLSIKTTVRKLREKVRVLKLKFDKYCQN--NEKDLTFSSSYEKEAFELSQKYWGQ 139
                                789******************************************9999..9**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.8E-1266138IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MQKHYQHPLL QNLNPLLNHL LLLLLLTPPV LTVPRSQHLS QXXXXXXXXX XXXXXXXXXX  60
XXXXXKSQTG NDPDKDFKAF HESLKDSLSI KTTVRKLREK VRVLKLKFDK YCQNNEKDLT  120
FSSSYEKEAF ELSQKYWGQE KKVEEKEKQP KKKSLKIVEE KEKQQPKKKI VAKKPAKEES  180
AKGESSGKMG HVNLSESFDF DETCMGLNML KRGMELLGEE KRKELETRWK KLKVREMEVL  240
VMRAELVKDH ARLILNELEG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220232KRKELETRWKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA41714
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3NPY61e-132A0A2K3NPY6_TRIPR; Mediator-associated protein 1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1816522