PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4167
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 296aa    MW: 32653.1 Da    PI: 7.1696
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4167genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.9e-0696118123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++Cp+C+k +s++  L  H++ H
  Tp57577_TGAC_v2_mRNA4167  96 FSCPYCDKKYSTPQALGGHQNAH 118
                               89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.0E-495122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.09E-595124No hitNo description
PROSITE profilePS5015710.9796123IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSERISIGNN ENRKLKRRIE EHSESRPEKE SKVMSSTSES NAEDLLNLSL GIHTKSSIKS  60
LEIGEHSRSS QNVVVEPLSQ TVDVEPLDDE QKVTEFSCPY CDKKYSTPQA LGGHQNAHKR  120
ERAFIKMEKQ RREDELISNL RFRSVHQPNS YPISSPNHYQ GYPYLGSANL HHPISHHTNN  180
IKPSWANGSS YGGYGGLYMP NTPPTIPQLA MRMSSSSLTT TGTTNFLGGG QNIAFPIPQR  240
SDTSGLELFA QANQTPSIAE PHTSPIGEGL IQTNSNRSAS STQSTSKELN LDFTL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4167
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024626741.11e-87zinc finger protein 1-like
TrEMBLA0A2K3NZY50.0A0A2K3NZY5_TRIPR; Zinc finger protein
STRINGAES795706e-87(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1671128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.12e-10C2H2 family protein