PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA41661

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 830aa MW: 96183.1 Da PI: 8.5151

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA41661	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35.2	4.2e-11	81	145	2	71
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 +Y++YA+ +GF ++k +sk+ ++g + t+ Cs+ k+++++k+ +++++trt+Cka++ v + Tp57577_TGAC_v2_mRNA41661 81 YYKNYARCMGFGISKINSKNA-DDG-KKYFTLACSRARKHTSNSKN---LLKPNPTTRTQCKARVSVAVS 145 8***********9998887.444.6889********9998...999***********99866 PP
2	FAR1	57.2	5.5e-18	195	279	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +Y++YA+ +GF ++k +sk+ ++g + t+ Cs+ k+++++k+ +++++trt+Cka++ v + dg+ +v+++ leH Tp57577_TGAC_v2_mRNA41661 195 YYKNYARCMGFGISKINSKNA-DDG-KKYFTLACSRARKHTSNSKN---LLKPNPTTRTQCKARVSVAVSLDGTIMVSRVALEH 273 8***********9998887.444.6889********9998...999**************************** PP FAR1 86 nHelap 91 nHel+p Tp57577_TGAC_v2_mRNA41661 274 NHELSP 279 **86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-8	81	145	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	6.3E-15	195	279	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.1E-15	363	422	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.656	562	598	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-5	564	595	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.3E-5	573	600	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 830 aa Download sequence Send to blast
LALLYSPPQF SSHNYNCIQL LQFPVSEINF KMEKRFTSSD QEENDHINEG FDDMQEANIA 60 HEDEEPKVGM TFISEDEVTT YYKNYARCMG FGISKINSKN ADDGKKYFTL ACSRARKHTS 120 NSKNLLKPNP TTRTQCKARV SVAVSLDGTI TLIXXXXXXX XXXXXDDMQE ANIAHEDEEP 180 KVGMTFISED EVTTYYKNYA RCMGFGISKI NSKNADDGKK YFTLACSRAR KHTSNSKNLL 240 KPNPTTRTQC KARVSVAVSL DGTIMVSRVA LEHNHELSPT KSRYFRCNKN LDPHIKRRLE 300 LNDKAGINVS RNFRSMVVEA NGYDNLTFGE KDCRNYIDKV RWLRLGTGDA DAIQNYFDRM 360 QRENNQFYYV MDVDDKSHLR NCMHGRAPNS IITDQDRAMK NAIEVVFPKA RHRWCLWHIM 420 KKVPEKLGRL SDYESIKTLL HDDVYDSSSI SDFMEKWRNM IACHELHDNE WLKGLFEERH 480 RWVPVYVRDT FWAGMSTTQR SESMNSFFDG YAFTNEKFKE IQTEISSLMY SNAFFERNDG 540 LNSIFWVIES KRVYDRNKDI KFKVFFNEKD FEIQCACCLF EFKGILCRHI LCVLQLTGKT 600 ESVPSCYILS RWRKDIKRRH TLIKCGFDHL AGNIVLQRVS KACDAFYDVA YMGIHTEDDL 660 LKVMNWIKDL KIELTCKQSS PVIIEEQRLV QDHASKILDP IVSQKKGRPR KKRETSKVDQ 720 IVKKKLAKKK TQNSSKKSKS GQTQEERFLS VQETENAGFS TSQTIDDIDT QESIQVNLAP 780 FNPNKKYFVE VNQVPYYTQS QIINHNLSYA ELLKAQHHMN DKPSSSGHE*

Sequence ? help Back to Top

Protein Sequence Length: 830 aa Download sequence Send to blast

LALLYSPPQF SSHNYNCIQL LQFPVSEINF KMEKRFTSSD QEENDHINEG FDDMQEANIA  60
HEDEEPKVGM TFISEDEVTT YYKNYARCMG FGISKINSKN ADDGKKYFTL ACSRARKHTS  120
NSKNLLKPNP TTRTQCKARV SVAVSLDGTI TLIXXXXXXX XXXXXDDMQE ANIAHEDEEP  180
KVGMTFISED EVTTYYKNYA RCMGFGISKI NSKNADDGKK YFTLACSRAR KHTSNSKNLL  240
KPNPTTRTQC KARVSVAVSL DGTIMVSRVA LEHNHELSPT KSRYFRCNKN LDPHIKRRLE  300
LNDKAGINVS RNFRSMVVEA NGYDNLTFGE KDCRNYIDKV RWLRLGTGDA DAIQNYFDRM  360
QRENNQFYYV MDVDDKSHLR NCMHGRAPNS IITDQDRAMK NAIEVVFPKA RHRWCLWHIM  420
KKVPEKLGRL SDYESIKTLL HDDVYDSSSI SDFMEKWRNM IACHELHDNE WLKGLFEERH  480
RWVPVYVRDT FWAGMSTTQR SESMNSFFDG YAFTNEKFKE IQTEISSLMY SNAFFERNDG  540
LNSIFWVIES KRVYDRNKDI KFKVFFNEKD FEIQCACCLF EFKGILCRHI LCVLQLTGKT  600
ESVPSCYILS RWRKDIKRRH TLIKCGFDHL AGNIVLQRVS KACDAFYDVA YMGIHTEDDL  660
LKVMNWIKDL KIELTCKQSS PVIIEEQRLV QDHASKILDP IVSQKKGRPR KKRETSKVDQ  720
IVKKKLAKKK TQNSSKKSKS GQTQEERFLS VQETENAGFS TSQTIDDIDT QESIQVNLAP  780
FNPNKKYFVE VNQVPYYTQS QIINHNLSYA ELLKAQHHMN DKPSSSGHE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA41661

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024626806.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A2Z6P9Q3	0.0	A0A2Z6P9Q3_TRISU; Uncharacterized protein
STRING	XP_004496070.1	1e-177	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13793	7	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	5e-54	FAR1-related sequence 1

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA41661