PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA41616

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 296aa MW: 34164.8 Da PI: 6.4084

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA41616	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.2	8.4e-11	80	138	2	59
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetr 59 fYn YA+ GF rk++ +sk nge t+ tfvC+++g ++e+k +++r +r+ tr Tp57577_TGAC_v2_mRNA41616 80 FYNWYASFYGFAARKHAVLRSKVNGELTQLTFVCYRQGIAKETKFPsISRRRVPRSRTR 138 9****************************************999873222222333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.8E-9	80	139	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-14	223	279	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MDDSTESNQH FLLQNSELEV QSKDEETESD EVQSDESGCC FDVNKAMNSL EDITCIDFKE 60 INMDGIMKYH FLNVAVAFIF YNWYASFYGF AARKHAVLRS KVNGELTQLT FVCYRQGIAK 120 ETKFPSISRR RVPRSRTRYM YNMQGMLRLN SSTNAKAACE YLESMRISDD NMFWRHGIDD 180 NGRLTHLFWC DGAAQRDYSV FGNSHLFWCD GVAQRDYNIF GDVVAFDATY KRNKYMCPLV 240 ILSGVNHHNK TIVFCVAIVC DETEQTYVWL LKQLLKTFLN SYICCHISNI CLGTK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA41616

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A392MH04	2e-76	A0A392MH04_9FABA; Protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3265	7	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-16	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA41616