PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA41590
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 333aa    MW: 37394.8 Da    PI: 6.6005
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA41590genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92e-14152198354
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Tp57577_TGAC_v2_mRNA41590 152 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 198
                                79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-12152198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-14153205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-15153207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.93E-5162201No hitNo description
Gene3DG3DSA:3.30.70.2602.7E-4243308No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MIQEDQGQCS SQTINNFETY QEQFLLQQQI MRQQQNTFSF PSSADHQVSP IFQQPWSMQQ  60
LHHHNHHVHD PFVIPQQQTS SSPYASLFNR STRVPSLQFA YDHHHHGSEH LRIISDTLQH  120
GSGVPFGGLH QSELGKMSAQ EIMEAKALAA SKSHSEAERR RRERINNHLA KLRSLLPSTT  180
KTDKASLLAE VIQHVKELKR QTSLIAETSP VPTECDELTV DAATDDDEEY GSNYGNKFII  240
KASLCCDDRS DLLPELIKTL KALRLRTLKA DITTLGGRVK NVLFITGEEE DHEYCISSIQ  300
EALKAVMEKS VGDDSASGSV KRQRTNIISI SN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA41590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465700.0AC146570.7 Medicago truncatula clone mth2-103j7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591832.11e-176transcription factor bHLH30
SwissprotQ9S7Y15e-95BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A2K3P0A00.0A0A2K3P0A0_TRIPR; Transcription factor bHLH30-like protein
STRINGAES620831e-176(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.17e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]