PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA4139 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | GeBP | ||||||||
Protein Properties | Length: 239aa MW: 26427 Da PI: 4.1295 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 33.4 | 1.3e-10 | 201 | 239 | 1 | 39 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafye 39 klfqr+++e+De+++L Gl+df+aktg +p + +afy+ Tp57577_TGAC_v2_mRNA4139 201 KLFQRVFNEDDELAILEGLVDFTAKTGNDPAKYPTAFYD 239 579**************************9999999885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MAKKRQRTPA ASKDDEPLTP VSKNDQPLTS ASKNDPPPPS KKPEEEKKDE DDEDEEDSSS 60 EEASSSEGEE DDDSEDDESE EEQPPLSKPA SKTPQTDNDK SESKKDEDDE DEEETDTDSD 120 QEPPPKLKSI NSKSIDETLK SKPQPKSSAA PARSGTKRSA ESDTKLVDEA KQSKKKKTTA 180 AADDKKEQEE DNKKPGDDSK KLFQRVFNED DELAILEGLV DFTAKTGNDP AKYPTAFYD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA4139 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3K2X3 | 1e-115 | A0A2K3K2X3_TRIPR; Mediator-associated protein 1-like (Fragment) | ||||
TrEMBL | A0A2K3KSE0 | 1e-116 | A0A2K3KSE0_TRIPR; Mediator-associated protein 1-like (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00390.1 | 3e-08 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA4139 |