PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA40938 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 107aa MW: 12583 Da PI: 5.2677 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 34 | 9.3e-11 | 32 | 97 | 2 | 64 |
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk..tekerrtraetrtgCka 64 Y+e++ ++GFsvrk k+ + ++++++ ++f+Csk+g++++e + ++k +ra +rt+Ck Tp57577_TGAC_v2_mRNA40938 32 LYQEHGFKMGFSVRKGKELYYdNDKKNTRLKDFYCSKQGFKNNEPEGeiASKVAYQRADSRTNCKV 97 7**************98765526666677899*********99998866667777*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.0E-8 | 32 | 96 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MEDNECEPVE IDKYKDIFLG QVVHSKDEAY NLYQEHGFKM GFSVRKGKEL YYDNDKKNTR 60 LKDFYCSKQG FKNNEPEGEI ASKVAYQRAD SRTNCKVYGE CWYESY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA40938 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149304 | 1e-109 | AC149304.11 Medicago truncatula clone mth2-76g4, complete sequence. | |||
GenBank | AC149581 | 1e-109 | AC149581.27 Medicago truncatula clone mth2-126m13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013452265.2 | 9e-55 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A072UB45 | 3e-53 | A0A072UB45_MEDTR; FAR1 DNA-binding domain protein | ||||
STRING | AES75586 | 2e-38 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3607 | 9 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 2e-07 | FAR1-related sequence 10 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA40938 |