PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40669
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 745aa    MW: 85945.1 Da    PI: 6.6988
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40669genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.11.1e-2629114291
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                                fY+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++     ++r++ ++gCka+l+vk+++dgkw+v+++++eH
  Tp57577_TGAC_v2_mRNA40669  29 FYKEYAKSVGFGTAKLSSRRSRSSKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASLHVKRRQDGKWYVYSFVKEH 108
                                ****************************************999877....9********************************* PP

                       FAR1  86 nHelap 91 
                                nHel p
  Tp57577_TGAC_v2_mRNA40669 109 NHELLP 114
                                ***975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-2429114IPR004330FAR1 DNA binding domain
PfamPF105518.9E-30227320IPR018289MULE transposase domain
PROSITE profilePS5096610.484506542IPR007527Zinc finger, SWIM-type
PfamPF044347.6E-8512540IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-7517544IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MDSSIVMVNT ISEPNDEMEF ESHETAYTFY KEYAKSVGFG TAKLSSRRSR SSKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASLH VKRRQDGKWY VYSFVKEHNH ELLPAQAHFF  120
RSHRNSDPLS NDVRMRRRKN STAGGKLFSA YQNVDCLENF MNRQQDKGRS LVLEPGNAQL  180
LLELFMHMQE ENPKFFYAVD LNEEHRLRNV FWVDSKGLED FCYFSDVVSF DTTYFTSKYK  240
IPLVLFIGVN HHMQPTLLGC ALIADESVFT FAWLLQTWFI AMGERAPQVI LTDQNDALKA  300
AVAAVFPGTR HCFCLWHVLE KIPKQLEFLS TWHDSFMEKF NKCIYQSWTE DQFEKRWWKL  360
VDRFKLRDIK WVQSLYDDRA SWVPTFMRDI SFAGLSTSSR SESLNSFFDK YVQVDTSLSE  420
FIEQYQLILE DRHEEEAKAN FDAWHETPEL KSPSPFEKQL LLVYTHEIYQ KFQFEVLGAS  480
ACHLKKENDG VITTYDVKDF ENNQNYMVEW NTSNSDICCS CHLFEYKGYL CRHAIVVLQM  540
SGVFSIPPKY ILKRWTNAAL SKYPISEKLE EVQSKVRRFN DLCRRAIILG EEGSLSQESY  600
YMALGALSEA LKQCVNFNNS VENAALATHV DCNVEEEYQS TTTSNDKFSD PKMKTGKKAA  660
RTGVAGRSLG SVENIEGNKR KVPQLGAVSG SNDGFQQMEP NDLRSHNAMQ MQFHSMVPAT  720
MFHNVSFTFD TATSTHLHDN HLPP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123136RNSDPLSNDVRMRR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40669
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331770.0AC233177.2 Medicago truncatula strain A17 clone mth2-54k10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632563.10.0protein FAR1-RELATED SEQUENCE 4
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLA0A2K3L2D60.0A0A2K3L2D6_TRIPR; Protein far-red impaired response 1-like (Fragment)
STRINGAES677080.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]