PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40619
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 630aa    MW: 73800.3 Da    PI: 6.6207
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40619genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.91.3e-2121106189
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                kf+ +Y+ ++GF vrk++++k+ ++g+i + +fvC keg r+++k++  k+ ++r+etrt+C+a++ +k +  g++ v+++++e
  Tp57577_TGAC_v2_mRNA40619  21 KFWVDYGGRLGFGVRKQYTHKK-KDGSISSCRFVCCKEGLRKPDKRD-YKTINPRPETRTNCRARIGLKHT-GGQFIVYDFVEE 101
                                69**************998886.8999*****************999.9********************99.************ PP

                       FAR1  85 HnHel 89 
                                HnH++
  Tp57577_TGAC_v2_mRNA40619 102 HNHNV 106
                                ***86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1721106IPR004330FAR1 DNA binding domain
PfamPF105517.0E-26229323IPR018289MULE transposase domain
PROSITE profilePS5096610.089510546IPR007527Zinc finger, SWIM-type
PfamPF044341.0E-5512544IPR007527Zinc finger, SWIM-type
SMARTSM005756.6E-5521548IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MEEDWKPKIG MVFYNIEEAW KFWVDYGGRL GFGVRKQYTH KKKDGSISSC RFVCCKEGLR  60
KPDKRDYKTI NPRPETRTNC RARIGLKHTG GQFIVYDFVE EHNHNVHLQE TIHMLSYEQK  120
VLEVQCHQID LANDDGLQHR TSLDLMSKEV EGSSDSGYTP RDQKHNIHKR RKMSLVNGEV  180
GHLLQYFQRQ LVENPTSYHA YQMDAEDQIT NVFWADARML IDYGYFGDVV SLDSTYCTDC  240
PHIPLAVFSG FDHHRGTVIF GAALLYDETA ESYKWLFEKF LEAHKQKMPQ TFFTDQNQTI  300
EKALAVVMPG TYNGLCTWHL MQNLDNLMKD KSDFIVDFKK CMYDYEDEEQ FEEGWRTLLV  360
KYDVKENTWL QRVYTIKEKW AACYMKKAFT LGMQSTQLSD NVNVEIKSFM NADLDIIKFF  420
EHFEGVVEEK RYNELKSECE ARQNISRLKY PYSGILQSVY GLYTPTIFDL FQHEYELFEA  480
CSVKSMNKNM NMQTPTIDFV IAMVRDLGEW QVSFDLDKTS ISCSCRKFES FGILCCHCIK  540
VFIHMDVKSV PARYILKRWT KLARSGALPN VGVSDLVEDV DLSPSQRYKK ICPRLIRIAI  600
EACRSKETFL FLSKVIDELD RQMLEFQNNQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40619
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630666.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_024630798.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K3LJA90.0A0A2K3LJA9_TRIPR; Protein FAR1-related sequence 5-like
STRINGXP_004490690.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-92FAR1-related sequence 5