PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA40586 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 144aa MW: 16763.5 Da PI: 10.28 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67 | 1.9e-21 | 75 | 119 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq t++kR+ngi+KKA+ELS+LCd+++ +++fs+ gk Tp57577_TGAC_v2_mRNA40586 75 KRLENTNGRQATYAKRKNGIMKKASELSILCDIDIILLMFSPGGK 119 689***************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.09E-23 | 67 | 138 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.577 | 67 | 119 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.2E-28 | 67 | 126 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.46E-24 | 68 | 120 | No hit | No description |
PRINTS | PR00404 | 6.7E-18 | 69 | 89 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-19 | 77 | 120 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-18 | 89 | 104 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-18 | 104 | 125 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MGNQTKSLTA PYSLGRSNDR FFWLPSSVHQ TYISSLSLYN NVQLNLPLPH QYSKPNFIFY 60 FFEICRMGRV KLKIKRLENT NGRQATYAKR KNGIMKKASE LSILCDIDII LLMFSPGGKP 120 SLCTGRRKYV FDYYYYYSLR DKI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA40586 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT025840 | 8e-76 | CT025840.2 Medicago truncatula chromosome 5 clone mth4-39c23, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q1PFA4 | 9e-29 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A396HSD2 | 6e-56 | A0A396HSD2_MEDTR; Putative transcription factor MADS-type1 family | ||||
STRING | AES96803 | 1e-43 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.1 | 5e-20 | AGAMOUS-like 30 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA40586 |
Publications ? help Back to Top | |||
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