PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA40538

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 370aa MW: 40750.4 Da PI: 7.2746

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA40538	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	109.2	2e-34	139	195	3	59
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + +++cprC+s+ntkfCyynny+++qPr+fCk+C+ryWt+GG+ r + +G+grrknk Tp57577_TGAC_v2_mRNA40538 139 DIIVPCPRCKSMNTKFCYYNNYNVKQPRHFCKNCQRYWTAGGTTRSMLIGAGRRKNK 195 56789***************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-25	123	195	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.8E-29	142	195	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.273	142	196	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	144	180	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MMIIDSTRKL FGRTIFLTHN NIDVSTDDSS SELASRLPNE DLSDHSLHSS LSSTSPLEVN 60 SPTEHVAKRY KETSIKELTS MQDDEASFQT TEDSKSPTSS SLVENPKTPL SETETSELNS 120 SKIDEQSDMS QDKSPNKPDI IVPCPRCKSM NTKFCYYNNY NVKQPRHFCK NCQRYWTAGG 180 TTRSMLIGAG RRKNKITFPS DVSHNGQMST TVLAFGSDSP MNVGSHEGTS DKSSQSVFPP 240 QFPWNPTMFY PVAFYPNIAY YGGCLPPSWS VQSISPQSCA PSNPSLGKHS RDGEIIFHSN 300 SKKGKLGSEN NKIESNNNSV LIPKILRTGL FKGFASKGDE ESYVVEASSS ILQANPAALS 360 RSLVFHERI*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MMIIDSTRKL FGRTIFLTHN NIDVSTDDSS SELASRLPNE DLSDHSLHSS LSSTSPLEVN  60
SPTEHVAKRY KETSIKELTS MQDDEASFQT TEDSKSPTSS SLVENPKTPL SETETSELNS  120
SKIDEQSDMS QDKSPNKPDI IVPCPRCKSM NTKFCYYNNY NVKQPRHFCK NCQRYWTAGG  180
TTRSMLIGAG RRKNKITFPS DVSHNGQMST TVLAFGSDSP MNVGSHEGTS DKSSQSVFPP  240
QFPWNPTMFY PVAFYPNIAY YGGCLPPSWS VQSISPQSCA PSNPSLGKHS RDGEIIFHSN  300
SKKGKLGSEN NKIESNNNSV LIPKILRTGL FKGFASKGDE ESYVVEASSS ILQANPAALS  360
RSLVFHERI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA40538

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003613833.1	1e-155	cyclic dof factor 3
TrEMBL	A0A2K3NIM8	0.0	A0A2K3NIM8_TRIPR; Dof zinc finger protein
STRING	AES96791	1e-155	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17310	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	1e-46	cycling DOF factor 1

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA40538