PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40497
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family G2-like
Protein Properties Length: 338aa    MW: 38296.3 Da    PI: 7.1877
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40497genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.21e-291567153
                    G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53
                               kprl+Wt++LH+rF++a++qLGG++kAtPk+i+++m+++gLtl+h+kSHLQ +
  Tp57577_TGAC_v2_mRNA40497 15 KPRLKWTHDLHQRFIDAINQLGGADKATPKSIMRVMEIPGLTLYHLKSHLQAF 67
                               79*************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-261367IPR009057Homeodomain-like
SuperFamilySSF466895.2E-141467IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-211567IPR006447Myb domain, plants
PfamPF002494.9E-61765IPR001005SANT/Myb domain
PfamPF143794.7E-20125170IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MKNQSMHFVL STDSKPRLKW THDLHQRFID AINQLGGADK ATPKSIMRVM EIPGLTLYHL  60
KSHLQAFPFC NYIIIFLKYR HGKSQQLETC SDNKQQDYTE TKSNDDHCSR EISLGDQSQI  120
TENLEIAQAL EMQMEVEKKL YEQIEVQKHL QLRIEAQGKY LQSVLTKAQE ALCGHNSSPI  180
GIRLTKDELS QLVTMVNNAC PSSPISELTK TRGISLNCGK RKQNNETMCS LESSLTSSES  240
SERKEEKSVS RLMSVSVDRI DDSSNEANGK KRNAETKFDS GYVEESSYRK RCGNKLKKAK  300
LSEEMFDLNS QCQNDMESTS SKTLLLDLNC SLNFCEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-171572259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-171572259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-171572259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-171572259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-171572259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-171572259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-171572259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-171572259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40497
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1373631e-133BT137363.1 Medicago truncatula clone JCVI-FLMt-17O6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613820.11e-170myb family transcription factor PHL8
SwissprotF4I2746e-69PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A2K3LI111e-169A0A2K3LI11_TRIPR; MYB family transcription factor apl
TrEMBLG7KGL21e-168G7KGL2_MEDTR; Myb-like transcription factor family protein
STRINGAES967781e-169(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52183253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.14e-71G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]