PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40490
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 369aa    MW: 42378.5 Da    PI: 4.5208
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40490genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013426123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ykC+ C +sF++   L  H+r+H
  Tp57577_TGAC_v2_mRNA40490  4 YKCKLCYRSFNNGRALGGHMRSH 26
                               9*********************9 PP
2zf-C2H214.20.00013248270123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ykC+ C+k+F++   L  H  +H
  Tp57577_TGAC_v2_mRNA40490 248 YKCETCNKVFKSYQALGGHRASH 270
                                9************9999998887 PP
3zf-C2H211.70.00083294316123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++Cp C ++F++   L  H rtH
  Tp57577_TGAC_v2_mRNA40490 294 HECPVCFRVFNSGQALGGHKRTH 316
                                79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.95E-5328No hitNo description
PfamPF139122.9E-8427IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.367426IPR007087Zinc finger, C2H2
SMARTSM003550.023426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.47E-8247316No hitNo description
PfamPF139126.3E-12247272IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.367248275IPR007087Zinc finger, C2H2
SMARTSM003550.01248270IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280250270IPR007087Zinc finger, C2H2
PROSITE profilePS501579.286294316IPR007087Zinc finger, C2H2
PfamPF139126.5E-11294316IPR007087Zinc finger, C2H2
SMARTSM003550.15294316IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280296316IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDKYKCKLCY RSFNNGRALG GHMRSHMMNL LVTKPEEDSS RMIQLSFEAE SAPSSSSSED  60
DDDDEKGLSY GLRENPKRSI RLVDQDFSFP QVDTSSVIVQ DIESETESSK NNPTRRRSKR  120
VWKIREFDQK YYGESAMKKV RFFNKTISSV VDHEPVSSVS DTTTEEDVAF CLMQLSRDNW  180
NRQSEQYEEP EEDDEEEIEY DEDEDEEAEE EEEEEEEEEI ERSLEDSDES QELIKVSKNN  240
NKVRKGRYKC ETCNKVFKSY QALGGHRASH KKIKLNITVE ESQPEYEVVE KKIHECPVCF  300
RVFNSGQALG GHKRTHVIHG STTTVPIFSS KKVAKSVIDL NLPAPIDDDE VSQIENSAVS  360
DAEFVKTR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40490
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013442483.10.0zinc finger protein ZAT9 isoform X2
TrEMBLA0A072THU20.0A0A072THU2_MEDTR; C2H2-type zinc finger protein, putative
STRINGXP_004494014.11e-172(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.15e-67C2H2-like zinc finger protein