PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40428
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 742aa    MW: 82343.4 Da    PI: 5.3262
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40428genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS319.19.5e-983817402374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                +++L+++Ae +++g+ ela+ +Larl+++ sp g+p+qR+a+yf+eAL + l++   ++ +  + s+ s++    ++ a+k fs
  Tp57577_TGAC_v2_mRNA40428 381 IDQLFKAAELIDAGNPELAHGILARLNHQISPIGKPFQRAAFYFMEALLQLLQS---NVNNGNNNSNFSPTGLLLKIGAYKSFS 461
                                689**************************************************9...777777778888778************ PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfA 169
                                e+sP+l+f+++t Nqa+leaveg +r+HiiDfdi+ G+QW +++q+La R++g+p l+iT+++sp ++++ el+ t+e+L+++A
  Tp57577_TGAC_v2_mRNA40428 462 EISPVLQFANFTSNQALLEAVEGYDRIHIIDFDIGFGGQWSSFMQELALRNGGAPALKITAFVSPFHHDEIELSFTHENLKQYA 545
                                ************************************************************************************ PP

                       GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                                 e++++fe ++l+ ++l++++ +   ++  Ea++Vnl +  ++ +      +s+ + vL++vk+l Pk+vv  ++ +d+++++F
  Tp57577_TGAC_v2_mRNA40428 546 GEINMSFELEILTLESLNSVS-WPQPLHDCEAVVVNLPICSFSNY------PSYLPLVLRFVKQLMPKIVVTLDRSCDRTDAPF 622
                                ************999999995.4445799*********9777666......677788*************************** PP

                       GRAS 254 lerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                                 ++++ al+ ys l++sl ++++  + +  +++E+ +l+++++++v+ + ++    + +   W++ l +aGF+p+++s+++++q
  Tp57577_TGAC_v2_mRNA40428 623 PQHMIFALQSYSGLLESLdAVGVNVHPDVLQMIEKYYLQPAVEKLVSGRLRS----QDRTLPWKNLLLSAGFSPLTFSNFTESQ 702
                                ******************777777777999****************998887....666679********************** PP

                       GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                a++l+++++++g++ve++++sl l+W+++ L+svS Wr
  Tp57577_TGAC_v2_mRNA40428 703 AECLVQRIPGRGFHVEKKQNSLALCWQRKDLISVSTWR 740
                                *************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.913354720IPR005202Transcription factor GRAS
PfamPF035143.3E-95381740IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MKAMPLSFEE YIGKGVLDFG SSVVVGSSDS LLFHQQQEQF LQRWRENCCY AGIEPNSVVV  60
FDHKKPNQET TPTSSSTLSS SHGSAAGGTG GSADSTTGGG AAAEANTKNN ILQGEGRCGM  120
EDWESVLSDS PSQDQDHSIL KLIMEDIEDA SMGLSKLLQV GTSNSHSQQD VEFNGFSFMD  180
QQSSVLDPIS SNVNNNNTNF VTSIDSSSVV ATTGNTAEIC SDFPFGRVMN QNPNFNSSLS  240
QGGLFHQQHQ QQQIQSLDEK LPQFVMNPNQ AQFMPNPSLV FPFTYSQLQE NQDIHHQPPA  300
KRLNCGTNYE IPKIPFLDSG QEMFLKRQQQ QQQQQQQHQQ QLQLLPHHLQ QRSMAPKQKM  360
GNPGSGGGED VSTHQFQQAI IDQLFKAAEL IDAGNPELAH GILARLNHQI SPIGKPFQRA  420
AFYFMEALLQ LLQSNVNNGN NNSNFSPTGL LLKIGAYKSF SEISPVLQFA NFTSNQALLE  480
AVEGYDRIHI IDFDIGFGGQ WSSFMQELAL RNGGAPALKI TAFVSPFHHD EIELSFTHEN  540
LKQYAGEINM SFELEILTLE SLNSVSWPQP LHDCEAVVVN LPICSFSNYP SYLPLVLRFV  600
KQLMPKIVVT LDRSCDRTDA PFPQHMIFAL QSYSGLLESL DAVGVNVHPD VLQMIEKYYL  660
QPAVEKLVSG RLRSQDRTLP WKNLLLSAGF SPLTFSNFTE SQAECLVQRI PGRGFHVEKK  720
QNSLALCWQR KDLISVSTWR C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-3339374016375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40428
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013442774.10.0scarecrow-like protein 6
SwissprotO813161e-136SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2K3P4Z40.0A0A2K3P4Z4_TRIPR; SCARECROW-like protein 6-like
STRINGXP_004515465.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-124GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]