PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA40403 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | SBP | ||||||||
Protein Properties | Length: 258aa MW: 28194.3 Da PI: 8.4291 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.6 | 2.7e-41 | 91 | 168 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC++ l +akeyhrrhkvCe+hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ Tp57577_TGAC_v2_mRNA40403 91 RCQVDGCHVALMNAKEYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSQ 168 6**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.3E-34 | 88 | 153 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.137 | 89 | 166 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.24E-38 | 90 | 171 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.1E-32 | 92 | 165 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDFGGNMFCL NNRDQSNNNN GNSNGFTTWG STSNGTPATA WNMDIFHVPV ENTADVNGGG 60 GGGGGLGDKR GKGYCGGGGG KVAAASFAVA RCQVDGCHVA LMNAKEYHRR HKVCEMHSKA 120 PKVVVLGLEQ RFCQQCSRFH VVSEFDDSKR SCRRRLAGHN ERRRKSSQDS VARNSSQGGC 180 ALSLLSSRTD SWLSPADLSV RCSAALSELI AENRAAIMAR QYVSDRDWHL HHHAVEDYRE 240 IQPESNYFPQ QMFPQTH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-31 | 92 | 165 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA40403 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC151743 | 6e-84 | AC151743.28 Medicago truncatula clone mth2-25e15, complete sequence. | |||
GenBank | AC151915 | 6e-84 | AC151915.8 Medicago truncatula clone mth2-30n12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004513942.1 | 1e-128 | squamosa promoter-binding-like protein 7 | ||||
Swissprot | Q01JD1 | 2e-54 | SPL7_ORYSI; Squamosa promoter-binding-like protein 7 | ||||
Swissprot | Q7XT42 | 2e-54 | SPL7_ORYSJ; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A1S2Z2N0 | 1e-127 | A0A1S2Z2N0_CICAR; squamosa promoter-binding-like protein 7 | ||||
STRING | XP_004513942.1 | 1e-127 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9613 | 27 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 1e-36 | squamosa promoter binding protein-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA40403 |
Publications ? help Back to Top | |||
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