PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40161
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ARR-B
Protein Properties Length: 244aa    MW: 27597.5 Da    PI: 6.5101
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40161genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like28.92.6e-09195216122
                    G2-like   1 kprlrWtpeLHerFveaveqLG 22 
                                k+r++Wtp LH++Fv av+qLG
  Tp57577_TGAC_v2_mRNA40161 195 KARVVWTPALHRKFVAAVNQLG 216
                                68*******************6 PP
2Response_reg73.67.8e-25141191106
                                EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS
               Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahge 82 
                                vl vdD+++ +++l+++l k +y +v++a+++  al+ll+e++  +Dl++  + mp+mdG++ll+     e++lp+i+++a+++
  Tp57577_TGAC_v2_mRNA40161  14 VLAVDDDRTCLKILEKLLLKCQY-HVTTAQNAITALNLLRENKnnFDLVISNVHMPDMDGFKLLELVGL-EMDLPVIMFSANDD 95 
                                799********************.***************888888*******************87754.558*********** PP

                                HHHHHHHHHTTESEEEESS--HHH CS
               Response_reg  83 eedalealkaGakdflsKpfdpee 106
                                ++++l+ ++ Ga d+l Kp+  +e
  Tp57577_TGAC_v2_mRNA40161  96 PKMVLKGINHGACDYLLKPVILKE 119
                                *******************86555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.83E-3411136IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.1E-4111166No hitNo description
SMARTSM004485.4E-2912124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.51813128IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.0E-2214121IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.69E-2136128No hitNo description
Gene3DG3DSA:1.10.10.601.3E-9192219IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MNDLRDKFPI GMRVLAVDDD RTCLKILEKL LLKCQYHVTT AQNAITALNL LRENKNNFDL  60
VISNVHMPDM DGFKLLELVG LEMDLPVIMF SANDDPKMVL KGINHGACDY LLKPVILKEV  120
QTIWQHVIRK KKTSKRSNHD AANSDSGNGI DSAVTGSSDQ NERPSSSRKR KEKNEDDDEE  180
NEDDHDNDDP TAQKKARVVW TPALHRKFVA AVNQLGIDSK FFLLSSMQKQ LSCYDHYICL  240
VML*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172RKRKEK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40161
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498785.11e-115two-component response regulator ARR10 isoform X1
RefseqXP_004498786.11e-116two-component response regulator ARR12 isoform X2
SwissprotB8AEH16e-88ORR23_ORYSI; Two-component response regulator ORR23
SwissprotQ6K8X65e-88ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A2K3PN471e-154A0A2K3PN47_TRIPR; Two-component response regulator
STRINGXP_004498785.11e-115(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95634112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-75response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]