PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA40071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 22729.2 Da PI: 4.4203 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.3 | 7.7e-18 | 18 | 67 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++G+r +k +g+Wv+eIr p++ r+r++lg+++tae+Aa+a +aa ++l+g Tp57577_TGAC_v2_mRNA40071 18 LFRGIRKRK-WGKWVSEIRLPNS---RQRIWLGSYDTAEKAARAFDAATLCLRG 67 69****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.28E-20 | 17 | 76 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.16E-29 | 17 | 77 | No hit | No description |
PROSITE profile | PS51032 | 21.641 | 18 | 75 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-32 | 18 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-29 | 18 | 76 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-10 | 18 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-10 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-10 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MVKSNVEKTA AERSDSSLFR GIRKRKWGKW VSEIRLPNSR QRIWLGSYDT AEKAARAFDA 60 ATLCLRGSGA KFNFPNNPPD IPGARSMTHS EIQAAAARFA NLDIHNEKLC RPDNEIIETL 120 SSSEVTVSLP SPALSDTTVQ AESDITDNGL FRDLFSETGS GYSMFPGFDD FSGEFYVPEM 180 TNFDYEEENM DGVIVLDTFL WDF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-15 | 14 | 76 | 10 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA40071 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003595363.1 | 1e-101 | ethylene-responsive transcription factor ERF018 | ||||
TrEMBL | A0A2K3PJK6 | 1e-149 | A0A2K3PJK6_TRIPR; Ethylene-responsive transcription factor erf017-like protein | ||||
STRING | AES65614 | 1e-101 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1479 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 3e-48 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA40071 |