PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40010
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 361aa    MW: 40264.5 Da    PI: 6.6197
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40010genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-13172220255
                                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                ++ h ++Er+RR+++ ++f  L   +P +      K +Ka+iL+ A++Y+k+Lq
  Tp57577_TGAC_v2_mRNA40010 172 CVDHVIAERKRRQQLTERFIALSATIPGL-----SKTDKASILRSAIDYVKQLQ 220
                                67899***********************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.535170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-11172220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-17174231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-17175232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.68E-12175224No hitNo description
SMARTSM003538.3E-16176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEDSSWENFH LHTEMECGDD YFMEKYNAVN IDGDDFLREI LLQTPEQSLM NSESENGSVT  60
VNVNGDVDVA GNMVKSNSSN SIVSQKQEQQ QRLKSKKVDV PRRSSSPTTY ILSFDNSTMV  120
PATPEPCVNL EGGKRDYCSK SDYSKKNKQS SEIKKTNTKN QGVKKARSGT QCVDHVIAER  180
KRRQQLTERF IALSATIPGL SKTDKASILR SAIDYVKQLQ ERVHELEEKQ DKNVGLTSSV  240
MVLNKINSCG INNNIEGTNS RDTSCDGDCS NIFPEIEVRV MGKEVLIEIH CEKQSGIELK  300
LLDHIENLQL FVTGNSVLPF GKSAISITII AQMGDGYKVK VHDLVKSIRN QVCWKLLSTC  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003604325.11e-156transcription factor bHLH18
TrEMBLG7JFR31e-155G7JFR3_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES865221e-156(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-42bHLH family protein