PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39985
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 319aa    MW: 35617.5 Da    PI: 6.6284
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39985genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1084.8e-34160217259
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                +Dgy+WrKYGqK vk+s+fprsYYrCt+ +C+vkk+vers +dp++v++tYeg+H+h+
  Tp57577_TGAC_v2_mRNA39985 160 EDGYRWRKYGQKAVKNSPFPRSYYRCTTVSCNVKKRVERSFTDPSIVVTTYEGQHTHP 217
                                8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381302.6E-1261318IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.801.1E-34144219IPR003657WRKY domain
SuperFamilySSF1182901.83E-29151219IPR003657WRKY domain
PROSITE profilePS5081131.628154219IPR003657WRKY domain
SMARTSM007743.2E-40159218IPR003657WRKY domain
PfamPF031062.2E-26160217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEKKEMGVKS EDINIDSSSL LNSYQFSSVF DFCEVEKSSS LGFMELLGVQ DYSPLLDVPQ  60
LSTMSMKTTT VMASSDTGKD SSEVLNQQQP ATPNSCSISS ASSEAINDNK TFVEQTEDDE  120
RDEEEKQKTN KQLKTKKTNQ KKQREPRFAF MTKSEVDHLE DGYRWRKYGQ KAVKNSPFPR  180
SYYRCTTVSC NVKKRVERSF TDPSIVVTTY EGQHTHPSPA MSRSAFVGAQ IAPPAGLVSS  240
GFSTNYGSFS QGTYLSSQYH QQQLLANTFS SLNHPYNNSS AFIQERKLCN QGTTTAAAFL  300
RDHGLLQDVV PSHMLKEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-281522201078Probable WRKY transcription factor 4
2lex_A5e-281522201078Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39985
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591381.11e-157probable WRKY transcription factor 23
SwissprotO229002e-68WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A2K3LKM00.0A0A2K3LKM0_TRIPR; WRKY transcription factor
STRINGAES616321e-157(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.12e-53WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]