PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39777
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26718.5 Da    PI: 7.4445
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39777genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF983.8e-31959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               krienk+nrqvtfskRr+g+lKKA+ELSvLCdaeva+iifs++gkl+eys+
  Tp57577_TGAC_v2_mRNA39777  9 KRIENKINRQVTFSKRRTGLLKKANELSVLCDAEVALIIFSHNGKLFEYST 59
                               79***********************************************96 PP
2K-box80.73.5e-2710617036100
                      K-box  36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                                Rh++GedL ++slkeLq LeqqL+++lk+iRs+++++++e i+elqkkek +qe+n++L+k+++e
  Tp57577_TGAC_v2_mRNA39777 106 RHYMGEDLATMSLKELQCLEQQLDTGLKNIRSRRTQVMYEAISELQKKEKGIQEQNNMLSKEIKE 170
                                9*************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.17161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-32283IPR002100Transcription factor, MADS-box
CDDcd002655.87E-40273No hitNo description
PRINTSPR004043.5E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.8E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.82983174IPR002487Transcription factor, K-box
PfamPF014869.4E-22106168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGRSKVQLKR IENKINRQVT FSKRRTGLLK KANELSVLCD AEVALIIFSH NGKLFEYSTD  60
SCMEQILERH ERYGYAEKQL VGNDTPDTQC NLVYIDLKLI FFYIFRHYMG EDLATMSLKE  120
LQCLEQQLDT GLKNIRSRRT QVMYEAISEL QKKEKGIQEQ NNMLSKEIKE KEKAVAQEAA  180
AQWEQPNYRV NTSFILQDPL PGLNIGGNYR VGEQEHGRNG LDLTLEPLYY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-21188187MEF2 CHIMERA
6byy_B6e-21188187MEF2 CHIMERA
6byy_C6e-21188187MEF2 CHIMERA
6byy_D6e-21188187MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39777
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0517451e-109BT051745.1 Medicago truncatula clone MTYF5_F6_F7_F81G-O-5 unknown mRNA.
GenBankBT1491431e-109BT149143.1 Medicago truncatula clone JCVI-FLMt-16M7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614234.31e-133truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S71e-101AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A396HSY71e-132A0A396HSY7_MEDTR; Putative transcription factor MADS-MIKC family
STRINGXP_004490236.11e-132(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-79MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]