PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA3977 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 220aa MW: 24990.6 Da PI: 9.8763 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65 | 7.8e-21 | 18 | 64 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i ks qvtfskRr g++KKA+ELS+LC++e+a+++fs+ +k + + Tp57577_TGAC_v2_mRNA3977 18 ILKKSHLQVTFSKRRSGLFKKASELSTLCGVEIAIVVFSPADKAFSF 64 6678999*********************************9987655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.9E-29 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.521 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.40E-31 | 9 | 76 | No hit | No description |
SuperFamily | SSF55455 | 5.76E-26 | 9 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-17 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-23 | 17 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-17 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-17 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MSKKKSTLGR QKIPIEKILK KSHLQVTFSK RRSGLFKKAS ELSTLCGVEI AIVVFSPADK 60 AFSFGHPEVE AIVDRYFTRN PPQESSAHQL VEVHRNANVR DLNIQLTQLL NHLEIEKKQG 120 EEIEHIRKDR QKKFWWESPI DELGLNELIQ LKGSIEELKQ NIGKFANKCM MEQANVFSPN 180 VGANGFGRYD SLDNKFGVGI NIAPPFSNGY YLNFRNGYL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-17 | 8 | 88 | 1 | 81 | MEF2C |
5f28_B | 1e-17 | 8 | 88 | 1 | 81 | MEF2C |
5f28_C | 1e-17 | 8 | 88 | 1 | 81 | MEF2C |
5f28_D | 1e-17 | 8 | 88 | 1 | 81 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA3977 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004511261.1 | 1e-138 | agamous-like MADS-box protein AGL61 | ||||
Swissprot | Q9FKK2 | 5e-52 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1S2YWY3 | 1e-137 | A0A1S2YWY3_CICAR; agamous-like MADS-box protein AGL61 | ||||
STRING | XP_004511261.1 | 1e-138 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-54 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA3977 |
Publications ? help Back to Top | |||
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