PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA39704

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 214aa MW: 24087.2 Da PI: 8.2021

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA39704	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.9	2e-39	45	144	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+l+r+C ++C++apyf a++ kkfa vhk+FGasnv+k+l ++pee+re++++sl+yeA+ar+rdPvyG++g i lq Tp57577_TGAC_v2_mRNA39704 45 SCAACKFLKRRCIPNCIFAPYFRADECKKFAKVHKVFGASNVSKILIEVPEEQREETVNSLAYEADARLRDPVYGCIGAIALLQ 128 6********************************************************************************* PP DUF260 85 qqleqlkaelallkee 100 +++ +l+++la +k++ Tp57577_TGAC_v2_mRNA39704 129 RKMIELQHDLAIAKDR 144 ********999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.34	44	145	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-38	45	142	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
LPLNSINSPK YTNRENHIFI TTKTKDREQY RNIIMKGYEP RSSSSCAACK FLKRRCIPNC 60 IFAPYFRADE CKKFAKVHKV FGASNVSKIL IEVPEEQREE TVNSLAYEAD ARLRDPVYGC 120 IGAIALLQRK MIELQHDLAI AKDRLARCAA AAAATHSSSS FSNDMSNSNV SLPPFPEFYS 180 CSDFNDNFSH SSSSQLFSRN ETGDDFLQIP YIF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-44	40	147	6	113	LOB family transfactor Ramosa2.1
5ly0_B	3e-44	40	147	6	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA39704

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC144729	0.0	AC144729.29 Medicago truncatula clone mth2-15j6, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003616672.1	1e-108	LOB domain-containing protein 21
Swissprot	Q9SRL8	8e-62	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A2K3KZ59	1e-128	A0A2K3KZ59_TRIPR; LOB domain-containing protein 21-like
STRING	AES99630	1e-107	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	4e-60	LOB domain-containing protein 21

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA39704

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]