PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39644
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family G2-like
Protein Properties Length: 362aa    MW: 40511.3 Da    PI: 6.8828
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39644genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.91.7e-31195250156
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                k+r++W++eLH++F++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQk+Rl+
  Tp57577_TGAC_v2_mRNA39644 195 KQRRCWSQELHKCFLHALQQLGGSDTATPKQIRELMKVDGLTNDEVKSHLQKFRLH 250
                                79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.546192252IPR017930Myb domain
SuperFamilySSF466893.05E-17193253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-28193253IPR009057Homeodomain-like
TIGRFAMsTIGR015579.7E-27195250IPR006447Myb domain, plants
PfamPF002492.2E-6197247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MQFNHKMGFH DYIQALQEEK KKIQVFPRDL PLSLELVTQA IENCKQQLSG ITTEYNLNGE  60
TECSEQTSME EGRVLEEFIP IKKRALTPDY DEDDDDYDEQ HSSRKMKSDW LTSVQLWNPS  120
PPPAKEEVPR KTNVLEVKRS GGAFHPFQRE EIAAEKGNAS EACKESTTSP QVPATSSTEL  180
VVGTSSKRYD KGQRKQRRCW SQELHKCFLH ALQQLGGSDT ATPKQIRELM KVDGLTNDEV  240
KSHLQKFRLH TRRSPVIHNN ANTQSTPMFL VGNIYVQPQV ATTTTVSGES AKITTPTGIY  300
APVAIHPPTT TTVIKPKFQK LELSENSNSE ERTNHSEGII VHSNSPASSS STHNITTSPH  360
C*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39644
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614475.21e-180transcription factor HHO3
TrEMBLA0A2K3L9I60.0A0A2K3L9I6_TRIPR; Two-component response regulator ARR14
STRINGAES974331e-177(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39183363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.14e-80G2-like family protein