PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39511
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 410aa    MW: 45941.3 Da    PI: 6.3208
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39511genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.3e-10211258455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Tp57577_TGAC_v2_mRNA39511 211 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 258
                                8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-17205277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-9205262No hitNo description
Gene3DG3DSA:4.10.280.101.3E-17207278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.618207257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-7211258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9213263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MLHCLNTNSG NLPSESCSSD ITVLERQRER MKWQQQQQQH EHEQQNEQQR YFSGNGFNSN  60
STVFCSSLQQ LVQNSQDSSS LPLLMPLQIP TVDVTSSSIS RTFSCPPLLP DPKLIDSSIG  120
KHNSSKKRKS EKLKVVDEIE NKDKRIKIGA EDGESKITGN HSAKKSNSNN KENCGAEDTS  180
NSKENSKVSE VQNQKTDYIH VRARRGQATD SHSLAERVRR EKISERMKYL QDLVPGCNKI  240
TGKAGMLDEI INYVQSLQKQ VEFLSMKLAT VNPRLDHFNI DDLFEKEVFP TCDANASFPA  300
IGISSELNNN NPYLQFNSPQ QFVPYGGLDT GMNPTDIGLK RSISAPISLP ETFIDTSCFS  360
QILPPTTWEG DYQQNLYNMS FDQARATTFP SQSQLFTGLV ENGNLKIEM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39511
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1405840.0BT140584.1 Medicago truncatula clone JCVI-FLMt-18N21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603935.20.0transcription factor bHLH63 isoform X2
TrEMBLA0A2K3NLK80.0A0A2K3NLK8_TRIPR; Transcription factor bHLH63-like protein
STRINGAES741860.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.15e-56cryptochrome-interacting basic-helix-loop-helix 1