PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39479
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 81aa    MW: 9173.52 Da    PI: 9.5105
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39479genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.4e-101661447
                               S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                               WT+   +l+ +a +++ ++   +W  +a+ +g g++ +++k ++  +
  Tp57577_TGAC_v2_mRNA39479 16 WTPKQNKLFEKALAKYDKDtpdRWQNVAKAVG-GKSVEEVKRHYELL 61
                               ********************************.***********765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.0021166IPR017884SANT domain
SMARTSM007172.3E-81264IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-131470IPR009057Homeodomain-like
PfamPF002494.9E-81660IPR001005SANT/Myb domain
CDDcd001671.08E-71662No hitNo description
Gene3DG3DSA:1.10.10.602.1E-51668IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MASTSLSKHK PCDSIWTPKQ NKLFEKALAK YDKDTPDRWQ NVAKAVGGKS VEEVKRHYEL  60
LLEDLKHIES GHVPIPNYKV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-30180175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39479
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4682642e-96CU468264.8 M.truncatula DNA sequence from clone MTH2-46F7 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024633411.12e-52protein RADIALIS-like 4
SwissprotQ1A1732e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLG7J7325e-51G7J732_MEDTR; MYB family transcription factor
STRINGAES741818e-52(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.17e-37RAD-like 6