PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39248
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 507aa    MW: 56873.5 Da    PI: 6.1104
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39248genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4631.8e-141775031374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                l++lLl+cA++v+sg+le+a+++L+++s+laspdgd+mqR+aayfteALa r+++++++l +al++++      see++++k+f
  Tp57577_TGAC_v2_mRNA39248  77 LIHLLLTCANHVASGSLENANTTLEQISQLASPDGDTMQRIAAYFTEALADRILKTWPGLHRALNSTRII--MLSEEVMVQKYF 158
                                689*************************************************************988886..599********* PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168
                                +e++P+lk++++++NqaI+e++ege++vHiiD+++ +++QW+aLlq L++Rpegpp+lRiTg+++    +ke l +++++L++ 
  Tp57577_TGAC_v2_mRNA39248 159 FELFPFLKVAYILTNQAIVESMEGEKMVHIIDLNAAEPAQWIALLQVLSARPEGPPHLRITGIHQ----QKEVLDQMAHKLSEE 238
                                *****************************************************************....9************** PP

                       GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll...................................... 214
                                Ae+l++pf+fn+ v+++le+l++e+Lrvk+gEala++++lqlh+ll                                      
  Tp57577_TGAC_v2_mRNA39248 239 AEKLDIPFQFNP-VVSKLENLDFEKLRVKTGEALAISSILQLHSLLalddessssrrktpllsrnsnglhlqkvmlmnqsaslg 321
                                ************.799******************************************************************** PP

                       GRAS 215 ........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                                                        ++++sl+   +++L++++slsPkv+vv+eq+++hn+++++er+leal+ y+alfd+le++
  Tp57577_TGAC_v2_mRNA39248 322 dllekdmangytpspdstsslspaSSNASLN--AESFLNALWSLSPKVMVVTEQDSNHNGSTLMERLLEALYSYAALFDCLEST 403
                                *******************998854444444..488************************************************ PP

                       GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                                ++r+s er k+E++l+g+ei+n++acegaer+erhe+l kW +rl+ +GF++vpls++ + qa++ l+ ++ +gy++ ee+g++
  Tp57577_TGAC_v2_mRNA39248 404 VSRTSLERFKIEKMLFGEEIKNIIACEGAERKERHEKLDKWFMRLDLCGFGNVPLSYYGMLQARRFLQSYGCEGYKMREENGCV 487
                                ************************************************************************************ PP

                       GRAS 359 vlgWkdrpLvsvSaWr 374
                                 ++W+dr+L+s++aWr
  Tp57577_TGAC_v2_mRNA39248 488 AICWQDRSLFSTTAWR 503
                                ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.37251483IPR005202Transcription factor GRAS
PfamPF035146.1E-13977503IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
LIFAKNLRLR LLLLFVVVVV TLHGMESMYQ EEGSSSVTCS PLQLFSMMSL SPSIGGIGSP  60
YPWLSRELKS EERGLYLIHL LLTCANHVAS GSLENANTTL EQISQLASPD GDTMQRIAAY  120
FTEALADRIL KTWPGLHRAL NSTRIIMLSE EVMVQKYFFE LFPFLKVAYI LTNQAIVESM  180
EGEKMVHIID LNAAEPAQWI ALLQVLSARP EGPPHLRITG IHQQKEVLDQ MAHKLSEEAE  240
KLDIPFQFNP VVSKLENLDF EKLRVKTGEA LAISSILQLH SLLALDDESS SSRRKTPLLS  300
RNSNGLHLQK VMLMNQSASL GDLLEKDMAN GYTPSPDSTS SLSPASSNAS LNAESFLNAL  360
WSLSPKVMVV TEQDSNHNGS TLMERLLEAL YSYAALFDCL ESTVSRTSLE RFKIEKMLFG  420
EEIKNIIACE GAERKERHEK LDKWFMRLDL CGFGNVPLSY YGMLQARRFL QSYGCEGYKM  480
REENGCVAIC WQDRSLFSTT AWRARK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-436950511381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39248
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2335690.0AC233569.4 Medicago truncatula clone mth2-73i21, complete sequence.
GenBankCR9550080.0CR955008.2 Medicago truncatula chromosome 5 clone mte1-51b2, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610972.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2K3MPK80.0A0A2K3MPK8_TRIPR; SCARECROW-like protein 3-like
STRINGAES939300.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]