PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA39141 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 165aa MW: 18951.3 Da PI: 7.414 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.3 | 7.5e-12 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i +s+r+ +f kR+ngi KK +E+ +L +a+v+ ii+ +++ Tp57577_TGAC_v2_mRNA39141 11 IVKDSKRKSSFQKRKNGISKKINEITTLSGANVCAIIYDENN 52 667899********************************8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-12 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.722 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 7.72E-21 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 5.36E-19 | 4 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-12 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MTGRNMELEY IVKDSKRKSS FQKRKNGISK KINEITTLSG ANVCAIIYDE NNPRATVCPS 60 KEEVQMVLDK FRSFPESEQK KTMVDHEGYV RQSIEKAREK LKKEKDKSKK KEMNNQIYHF 120 IQTGEIDGNV SESDLEDLSS LIVTNIKEVD QRIEWSQAQE GTDN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA39141 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003594864.1 | 1e-59 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2K3N650 | 1e-105 | A0A2K3N650_TRIPR; Agamous-like mads-box protein agl80-like | ||||
STRING | AES65115 | 4e-59 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF38959 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 7e-24 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA39141 |