PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39058
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 158aa    MW: 18574.6 Da    PI: 9.2604
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39058genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.12.6e-141050242
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                               +i+++  r+vt+ kR++ ++KK  EL +LCd+ ++ ii s+
  Tp57577_TGAC_v2_mRNA39058 10 FISDELSRKVTYNKRKKCLIKKVTELTTLCDVPACAIISSP 50
                               89************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-19160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.18E-21179IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.867149IPR002100Transcription factor, MADS-box
CDDcd002662.36E-20384No hitNo description
PRINTSPR004045.2E-8323IPR002100Transcription factor, MADS-box
PfamPF003194.2E-141050IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MPRRKIKLAF ISDELSRKVT YNKRKKCLIK KVTELTTLCD VPACAIISSP FDSQPEVWPN  60
REGAMKVIER YQNSYMRDEK RNVNQERFTM QMVTKARDQL KKMKRDNRED ELNLLMFVCM  120
QNNSLSIDLN AEELKDFDKF VENKLKEVGC KINETLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39058
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496299.14e-74agamous-like MADS-box protein AGL80
TrEMBLA0A2K3KYI41e-108A0A2K3KYI4_TRIPR; Agamous-like mads-box protein agl80-like
STRINGXP_004496299.11e-73(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13237929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.11e-35AGAMOUS-like 38