PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39013
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 605aa    MW: 68620.5 Da    PI: 7.9111
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39013genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-08498544447
                                S-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   4 WTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                                WT++E+++++davk+ +       W+ I + ++ ++++++++s+++++
  Tp57577_TGAC_v2_mRNA39013 498 WTQQEEKKFKDAVKLNPASldrcFWDNIFKSFP-KKSRENLVSYYFNV 544
                                *****************99**************.9**********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101117.078165IPR001606ARID DNA-binding domain
SMARTSM005017.1E-4266IPR001606ARID DNA-binding domain
SuperFamilySSF467744.32E-14467IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.609.5E-12566IPR001606ARID DNA-binding domain
PfamPF013881.2E-7560IPR001606ARID DNA-binding domain
SMARTSM007170.0094494547IPR001005SANT/Myb domain
PfamPF002493.3E-6498544IPR001005SANT/Myb domain
CDDcd001674.88E-5498545No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016575Biological Processhistone deacetylation
GO:0048235Biological Processpollen sperm cell differentiation
GO:0000118Cellular Componenthistone deacetylase complex
GO:0048555Cellular Componentgenerative cell nucleus
GO:0048556Cellular Componentmicrosporocyte nucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MLGNDQPLDL YKLFMVVKDK GGYDVVCKNR LWDLVGEEYG LGVKVGSSVE LVYSKYLSTL  60
ETPLRKLVDG EFPKCDLVDD RVKFGERLME LQAEFFLDDY GEEDAGDSVY ECRRKLCNRV  120
KGVKGVNQEL NAVELERVYD YIDGKKLCGT NRVKDVNLES NAAKKVHNRG LVGVHMQDCK  180
KSETSLRKLV NHNAVTEIME GFDGGKILAM DDVSDAANSM PGLSDGSKSC ANDDANDSSD  240
DVLVLEPSSV NRESFGRKRK RDSMTEMLSW VTSTAKNPCD PVIGSMPEKP KWKSYGNQET  300
WKKVLLFREA AFLKRDFGSS CEKPSWLAQR MHPCMYDDNL GTNYNLRQRI KCDNGLVAGK  360
SSSALQRTPR SDTENSAKKK LLDSGDSQSI LDTPPTVNIP LGPNHQVEVA EWTGTTHESD  420
SKWLGTQIWP LKTVKSKFLE WEHVGQGRQD SCSCQVQGSV ECVRFHVTEK RSKLKLELGV  480
AFYQWSLDKV GEEVRRWWTQ QEEKKFKDAV KLNPASLDRC FWDNIFKSFP KKSRENLVSY  540
YFNVFLLQRR AYQNRHTPDN IDSDDEESEF TSLRGIFGHK NNKSNSITIL SPKKPQTKPH  600
TKGR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39013
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449346.10.0AT-rich interactive domain-containing protein 2
RefseqXP_024626172.10.0AT-rich interactive domain-containing protein 2
RefseqXP_024626173.10.0AT-rich interactive domain-containing protein 2
TrEMBLG7L5N90.0G7L5N9_MEDTR; AT-rich interactive domain protein
STRINGAES802190.0(Medicago truncatula)