PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA38994
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family BES1
Protein Properties Length: 707aa    MW: 78831.8 Da    PI: 5.4308
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA38994genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822142.73.3e-44802181132
                     DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.eeae 80 
                                gg++r+++ +E+E++k+RERrRRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +g+ p   +++
  Tp57577_TGAC_v2_mRNA38994  80 GGTRRSRPVEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGQMPAgGNSA 163
                                5899*****************************************************************976677777753444 PP

                     DUF822  81 aagssasaspesslq...sslkssalaspvesysaspksssfpspssldsislas 132
                                ++ ss+s  p+ +     ++ ++s   sp+e  ++ +k + +p+ps +    ++s
  Tp57577_TGAC_v2_mRNA38994 164 VVTSSSSHVPSQQPPsvsLKGVASDYGSPLEYNACPMKGVFVPAPSPSPYDLSSS 218
                                4444433333322222124456788899999999999999998877654433333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.6E-3981215IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.74E-181263702IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.9E-196266700IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.7E-102272691IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.7E-68303317IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.7E-68324342IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.7E-68346367IPR001554Glycoside hydrolase, family 14
PRINTSPR008427.1E-6429438IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007503.7E-68439461IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.7E-68512531IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.7E-68546562IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.7E-68563574IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.7E-68581604IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.7E-68621643IPR001554Glycoside hydrolase, family 14
PRINTSPR008427.1E-6672686IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008427.1E-6687701IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MATDMQRLVG MSEDDEEEMG MGMKGEDDED EDYDENGGVL GNVSRMVEID GGSGMGTGAG  60
GDSRFQQHHL FQEQVGSPGG GTRRSRPVEE KERTKLRERR RRAITARILA GLRRHGNYNL  120
RVRADINDVI AALAREAGWV VLPDGTTFPS RSQGQMPAGG NSAVVTSSSS HVPSQQPPSV  180
SLKGVASDYG SPLEYNACPM KGVFVPAPSP SPYDLSSSSR SQTSMVGDGE VQRDNPPVVG  240
GSIDTINEKQ IVDIPPRLSE RDFAGTPYVP VYVMLPLGVI NIKCELVDPD GLLKQLKVLK  300
SANVDGVMVD CWWGIVEAHA PQEYNWNGYK RLFQMVHELK LKLQVVMSFH ECGGNFGDDV  360
CIPLPHWVAE IGRSNPDIFF TDREGRHNPE CLSWGIDKER VLRGRTAVEV YFDFMRSFRI  420
EFDEYFEDGF ISMIEVGLGP CGELRYPSSP VKHGWRYPGV GEFQCYDRYM LKNLRKAAEA  480
RGHTIWARGP DNVGNYNSQP HETGFFCDGG DYDGFYGRFF LNWYSQALVD HGNRVLSLAK  540
LAFEGSCIAA KLSGIYWWYK TASHAAELTA GYYNPCNRDG YAAIVAMLKR NGVSLNIACV  600
DLHTLNQHEG FPEPFADPER LVWQVLNAGW DVGLPVVSEN SLPCLNRVSY NKVLDNTKPM  660
NDPDGRHFSS FTYLRLSPLL MERQNFIEFE RFVKRMHGEA VLDLQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wds_A1e-14726869911444Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA38994
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097797e-89AP009779.1 Lotus japonicus genomic DNA, clone: LjT34L14, TM1967, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449334.10.0beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A072U1V60.0A0A072U1V6_MEDTR; Beta-amylase
STRINGXP_004492727.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]