PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA38993 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | BES1 | ||||||||
Protein Properties | Length: 707aa MW: 78831.8 Da PI: 5.4308 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 142.7 | 3.3e-44 | 80 | 218 | 1 | 132 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.eeae 80 gg++r+++ +E+E++k+RERrRRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ +g+ p +++ Tp57577_TGAC_v2_mRNA38993 80 GGTRRSRPVEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGQMPAgGNSA 163 5899*****************************************************************976677777753444 PP DUF822 81 aagssasaspesslq...sslkssalaspvesysaspksssfpspssldsislas 132 ++ ss+s p+ + ++ ++s sp+e ++ +k + +p+ps + ++s Tp57577_TGAC_v2_mRNA38993 164 VVTSSSSHVPSQQPPsvsLKGVASDYGSPLEYNACPMKGVFVPAPSPSPYDLSSS 218 4444433333322222124456788899999999999999998877654433333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 4.6E-39 | 81 | 215 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 1.74E-181 | 263 | 702 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 1.9E-196 | 266 | 700 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 1.7E-102 | 272 | 691 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.7E-68 | 303 | 317 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.7E-68 | 324 | 342 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.7E-68 | 346 | 367 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00842 | 7.1E-6 | 429 | 438 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00750 | 3.7E-68 | 439 | 461 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.7E-68 | 512 | 531 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.7E-68 | 546 | 562 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.7E-68 | 563 | 574 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.7E-68 | 581 | 604 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.7E-68 | 621 | 643 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00842 | 7.1E-6 | 672 | 686 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00842 | 7.1E-6 | 687 | 701 | IPR001371 | Glycoside hydrolase, family 14B, plant |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 707 aa Download sequence Send to blast |
MATDMQRLVG MSEDDEEEMG MGMKGEDDED EDYDENGGVL GNVSRMVEID GGSGMGTGAG 60 GDSRFQQHHL FQEQVGSPGG GTRRSRPVEE KERTKLRERR RRAITARILA GLRRHGNYNL 120 RVRADINDVI AALAREAGWV VLPDGTTFPS RSQGQMPAGG NSAVVTSSSS HVPSQQPPSV 180 SLKGVASDYG SPLEYNACPM KGVFVPAPSP SPYDLSSSSR SQTSMVGDGE VQRDNPPVVG 240 GSIDTINEKQ IVDIPPRLSE RDFAGTPYVP VYVMLPLGVI NIKCELVDPD GLLKQLKVLK 300 SANVDGVMVD CWWGIVEAHA PQEYNWNGYK RLFQMVHELK LKLQVVMSFH ECGGNFGDDV 360 CIPLPHWVAE IGRSNPDIFF TDREGRHNPE CLSWGIDKER VLRGRTAVEV YFDFMRSFRI 420 EFDEYFEDGF ISMIEVGLGP CGELRYPSSP VKHGWRYPGV GEFQCYDRYM LKNLRKAAEA 480 RGHTIWARGP DNVGNYNSQP HETGFFCDGG DYDGFYGRFF LNWYSQALVD HGNRVLSLAK 540 LAFEGSCIAA KLSGIYWWYK TASHAAELTA GYYNPCNRDG YAAIVAMLKR NGVSLNIACV 600 DLHTLNQHEG FPEPFADPER LVWQVLNAGW DVGLPVVSEN SLPCLNRVSY NKVLDNTKPM 660 NDPDGRHFSS FTYLRLSPLL MERQNFIEFE RFVKRMHGEA VLDLQV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wds_A | 1e-147 | 268 | 699 | 11 | 444 | Beta-amylase |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA38993 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009779 | 7e-89 | AP009779.1 Lotus japonicus genomic DNA, clone: LjT34L14, TM1967, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013449334.1 | 0.0 | beta-amylase 7 | ||||
Swissprot | O80831 | 0.0 | BAM7_ARATH; Beta-amylase 7 | ||||
TrEMBL | A0A072U1V6 | 0.0 | A0A072U1V6_MEDTR; Beta-amylase | ||||
STRING | XP_004492727.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10883 | 33 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45880.1 | 0.0 | beta-amylase 7 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA38993 |
Publications ? help Back to Top | |||
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