PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA38964
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 301aa    MW: 33472.8 Da    PI: 7.018
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA38964genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00026116138123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C+ C++ Fs++  L  H++ H
  Tp57577_TGAC_v2_mRNA38964 116 FSCNFCKRQFSSSQALGGHQNAH 138
                                89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.45E-6114144No hitNo description
PROSITE profilePS5015711.614116143IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.4E-5116144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAAASNQSSA TSESISNKVC EDENNVNNDE VTMKGKEVLI SEQHQPLKSN TDLLLEFVKL  60
SNDDLIPRSN VREHDFFTPS KDLGASSSSL PWANNKPKPN NEENTKEKSS DSRSDFSCNF  120
CKRQFSSSQA LGGHQNAHKR ERAFAKHHQE IQNGFGTPHY PFPYYTSYPS LSSSNYGIGS  180
YNKALGIRTD SMIQKPNYSW TPPPYRFGST PKWTPMQEMM RNFSSLDRLK IESLNANNEK  240
SAPNNMTKLD VGESSRNVDM KSNSDVDKST VVADGSDHHD TNKKEASDSK STGLDLSLKL  300
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA38964
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487223.13e-94zinc finger protein 1-like
TrEMBLA0A2K3MW580.0A0A2K3MW58_TRIPR; Zinc finger protein 3-like
STRINGXP_004487223.11e-93(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.13e-13C2H2 family protein