PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA38920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 842aa MW: 97644.2 Da PI: 7.9958 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 66 | 1e-20 | 144 | 233 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 fYn Y+++ GFs rk++ +++ +++e+++++fvC+++g+re++ k+ + ++r+ +++tr+gC+ak +v+ ++ +++w+v ++ Tp57577_TGAC_v2_mRNA38920 144 FYNWYSRMHGFSARKNRIRRN-KDQEVVQQEFVCYRQGFREDRFKDnKIRQREAKVVTRCGCEAKCTVHFDHiNQRWYVRWIND 226 *****************9999.7777****************98884567788999**************************** PP FAR1 84 eHnHela 90 HnH+++ Tp57577_TGAC_v2_mRNA38920 227 YHNHPFV 233 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.1E-19 | 144 | 233 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.7E-33 | 353 | 447 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.854 | 635 | 666 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0099 | 641 | 668 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 842 aa Download sequence Send to blast |
MRSIQEGSTT PPSSSSREGR TSSSSSRSQQ QHHLHRTTKI VLLLCKFVRK FPASSNSSIQ 60 VETLLLTKQP EMETEYEEQI CSPTDNSCEG LETESGTINM KFDYKGHRIP INGVEDMGGL 120 NFKKFTPAEL LQYDFPNREV AFTFYNWYSR MHGFSARKNR IRRNKDQEVV QQEFVCYRQG 180 FREDRFKDNK IRQREAKVVT RCGCEAKCTV HFDHINQRWY VRWINDYHNH PFVEEKFIGF 240 LPGHRGMDDD DILQMNHHKK SGIRTSQIFG SFANQVGGYE HVTFSVQDMY NAVDKERRSK 300 GTDSRAALAY LRSLKSSDPT MYWKHTVDKQ GRLEHLFWSD GRSQMDYNIF GDVLAFDATY 360 KKNRYLCPLV IFSGVNHHNQ TTVFATAIVA NETEETYVWL LECLLEVMNG KMPKSVITDG 420 DLAMKNAIRR VFPNAHHRLC AWHLIRNATS NVKSNRFTHL FRKLMLCDYE LVDFERKWND 480 MVTECGVEDN NWVLDMYEKK EMWATAHIRG KFFGGFRTTS RCEGLHAKIG KFVNYRNNLT 540 EFLQHFNQCI EYLRYKELEA DYLSMHGERV TQTEFHLLEK NASKVYTKNV FFLFRTIMQK 600 SSAVKVVGCK QTASCFIYIV NKYCRSDSEW HVSYWPVSME IKCSCLRMES IGIPCDHIVC 660 VMVYLNMVEI PSSLVLDRWT KNVKDLSNYT RQGQSGGWDS MSVCRYKSLN QRCREINSLV 720 CKNPEAYAET IELLNDHYGH VKSKYEVQDE GSDKMEGHNE RYLQNPVIAR TKGRGGNVAG 780 RAGNKRKKSQ CGFCGIVGHN KQTCAAFKKQ KKTVDKSDVD DDEEDDGGGD DDDDDDDDDY 840 R* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 785 | 810 | RKKSQCGFCGIVGHNKQTCAAFKKQK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA38920 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024640477.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2K3MPM3 | 0.0 | A0A2K3MPM3_TRIPR; Protein FAR1-related sequence 5-like (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3265 | 7 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-89 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA38920 |