PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA38920
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 842aa    MW: 97644.2 Da    PI: 7.9958
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA38920genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1661e-20144233290
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 
                                fYn Y+++ GFs rk++ +++ +++e+++++fvC+++g+re++ k+ + ++r+ +++tr+gC+ak +v+ ++ +++w+v  ++ 
  Tp57577_TGAC_v2_mRNA38920 144 FYNWYSRMHGFSARKNRIRRN-KDQEVVQQEFVCYRQGFREDRFKDnKIRQREAKVVTRCGCEAKCTVHFDHiNQRWYVRWIND 226
                                *****************9999.7777****************98884567788999**************************** PP

                       FAR1  84 eHnHela 90 
                                 HnH+++
  Tp57577_TGAC_v2_mRNA38920 227 YHNHPFV 233
                                ****986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.1E-19144233IPR004330FAR1 DNA binding domain
PfamPF105512.7E-33353447IPR018289MULE transposase domain
PROSITE profilePS509669.854635666IPR007527Zinc finger, SWIM-type
SMARTSM005750.0099641668IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MRSIQEGSTT PPSSSSREGR TSSSSSRSQQ QHHLHRTTKI VLLLCKFVRK FPASSNSSIQ  60
VETLLLTKQP EMETEYEEQI CSPTDNSCEG LETESGTINM KFDYKGHRIP INGVEDMGGL  120
NFKKFTPAEL LQYDFPNREV AFTFYNWYSR MHGFSARKNR IRRNKDQEVV QQEFVCYRQG  180
FREDRFKDNK IRQREAKVVT RCGCEAKCTV HFDHINQRWY VRWINDYHNH PFVEEKFIGF  240
LPGHRGMDDD DILQMNHHKK SGIRTSQIFG SFANQVGGYE HVTFSVQDMY NAVDKERRSK  300
GTDSRAALAY LRSLKSSDPT MYWKHTVDKQ GRLEHLFWSD GRSQMDYNIF GDVLAFDATY  360
KKNRYLCPLV IFSGVNHHNQ TTVFATAIVA NETEETYVWL LECLLEVMNG KMPKSVITDG  420
DLAMKNAIRR VFPNAHHRLC AWHLIRNATS NVKSNRFTHL FRKLMLCDYE LVDFERKWND  480
MVTECGVEDN NWVLDMYEKK EMWATAHIRG KFFGGFRTTS RCEGLHAKIG KFVNYRNNLT  540
EFLQHFNQCI EYLRYKELEA DYLSMHGERV TQTEFHLLEK NASKVYTKNV FFLFRTIMQK  600
SSAVKVVGCK QTASCFIYIV NKYCRSDSEW HVSYWPVSME IKCSCLRMES IGIPCDHIVC  660
VMVYLNMVEI PSSLVLDRWT KNVKDLSNYT RQGQSGGWDS MSVCRYKSLN QRCREINSLV  720
CKNPEAYAET IELLNDHYGH VKSKYEVQDE GSDKMEGHNE RYLQNPVIAR TKGRGGNVAG  780
RAGNKRKKSQ CGFCGIVGHN KQTCAAFKKQ KKTVDKSDVD DDEEDDGGGD DDDDDDDDDY  840
R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1785810RKKSQCGFCGIVGHNKQTCAAFKKQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA38920
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640477.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K3MPM30.0A0A2K3MPM3_TRIPR; Protein FAR1-related sequence 5-like (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3265734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-89FAR1-related sequence 5