PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA38898
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 200aa    MW: 22854.7 Da    PI: 6.7772
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA38898genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.61.6e-191562148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg+WTteEd++l+++++ +G + Wkt++ + g++R++k+c++rw++yl
  Tp57577_TGAC_v2_mRNA38898 15 RGAWTTEEDQKLAQCIQTHGAKKWKTVSIKSGLNRCGKSCRLRWLNYL 62
                               89********************************************97 PP
2Myb_DNA-binding53.65.2e-1768113148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg+ + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Tp57577_TGAC_v2_mRNA38898  68 RGNISDEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 113
                                7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.6271062IPR017930Myb domain
SuperFamilySSF466893.19E-2913109IPR009057Homeodomain-like
SMARTSM007171.1E-141464IPR001005SANT/Myb domain
PfamPF002493.1E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-231669IPR009057Homeodomain-like
CDDcd001675.37E-101762No hitNo description
PROSITE profilePS5129425.19563117IPR017930Myb domain
SMARTSM007172.1E-1467115IPR001005SANT/Myb domain
PfamPF002492.8E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-2670118IPR009057Homeodomain-like
CDDcd001672.83E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010090Biological Processtrichome morphogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0048629Biological Processtrichome patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAPRKDVKTK KTMNRGAWTT EEDQKLAQCI QTHGAKKWKT VSIKSGLNRC GKSCRLRWLN  60
YLRPNIKRGN ISDEEEDLII RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN SHLCKKVNQI  120
GEKPETSTAQ ETTAQDNVAG DSGMLENKDS VNGSIDSDVI FDVNEFLDFS TEESFGFDWV  180
NKFLELDQIQ FIENTERSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-291311725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA38898
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4907761e-115AB490776.1 Lotus japonicus LjPAP mRNA for R2R3-MYB transcription factor LjPAP, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508935.11e-122transcription factor MYB114-like
SwissprotQ388502e-53MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A2K3LH281e-136A0A2K3LH28_TRIPR; Anthocyanin regulatory c1
STRINGXP_004508935.11e-121(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.17e-56myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]