PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA38873 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 310aa MW: 34822.7 Da PI: 5.4653 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.8 | 4.3e-39 | 15 | 114 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ +++am+++++++++ra+dPv G+++ i++lq Tp57577_TGAC_v2_mRNA38873 15 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNISKIIKNLDPPLKDQAMRTIIFQSDMRANDPVGGCYKYIQDLQ 98 7*********************************************************************************** PP DUF260 85 qqleqlkaelallkee 100 q+e k el+l+ ++ Tp57577_TGAC_v2_mRNA38873 99 TQIEYCKIELDLVLQQ 114 *********9998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.491 | 14 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-36 | 15 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MNNVNINKNN NTTQACAACK YQRRKCAPDC ILAPYFPHDR QRQFLNAHKL FGVSNISKII 60 KNLDPPLKDQ AMRTIIFQSD MRANDPVGGC YKYIQDLQTQ IEYCKIELDL VLQQLAVFRA 120 QSHQHQQQEV VNYGDQVLMN SDSLLGFYNS SGSIVSTTAP AHYHYNVQQQ VVPQLQLQEH 180 EQEQYIMMNE SNSSNSSINS NTPLQQHIND WGAMQSSISL SSLSLHGQSS NASDEYDHKP 240 IIDIPCDERN ELGFDSGEIL HHSDEAVLFK INDGVIKAEG DYIQQTQAQA QDHDLKGAAT 300 LFTLTNCTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-25 | 16 | 115 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-25 | 16 | 115 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA38873 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC140915 | 0.0 | AC140915.6 Medicago truncatula chromosome 8 clone mth2-10l24 map 9.500cM, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003627098.1 | 1e-163 | LOB domain-containing protein 22 | ||||
TrEMBL | G7LHF8 | 1e-162 | G7LHF8_MEDTR; LOB domain protein | ||||
STRING | AET01574 | 1e-163 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4133 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 5e-61 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA38873 |