PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA38803
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 530aa    MW: 59737.5 Da    PI: 7.1148
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA38803genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.29.2e-1121525281374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseela 79 
                                lv+lL++cAeav+ +d++ a+ lL++l+ +a   g+++qR+a++f+++L +rl+  ++   +++ + ++s +n     s+e   
  Tp57577_TGAC_v2_mRNA38803 152 LVQLLIACAEAVACRDKSHASVLLSELKSNALVFGSSFQRVASCFVQGLTERLTLIQPIGNNSVGSDTKSMMNimdaaSEEMEE 235
                                689***************************************************977777777777777777788888888889 PP

                       GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp...slRiTgvgspesgske 156
                                a+kl +e++P l+f+h++aN+ Ilea+ege+ vH++D+++s    +G QW  L+q+La+R++++    +lRiT+vg        
  Tp57577_TGAC_v2_mRNA38803 236 AFKLVYEICPHLQFGHFVANSIILEAFEGESFVHVVDLGMSlglpHGHQWRGLIQSLANRSGSQRvlrRLRITAVGL----CIA 315
                                99***********************************99874444678*************775433499*******....*** PP

                       GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240
                                +++ +g+ L+ +A++lgv++ef++ v+k+le+l++e+++v+++E+l+Vn++lqlh +++es    +   +vL++v +lsPkv+v
  Tp57577_TGAC_v2_mRNA38803 316 RIQVIGKELSIYAKNLGVHLEFSI-VEKNLENLKPEDIKVNEKEVLVVNSILQLHCVVKESRGALN---SVLQMVHGLSPKVLV 395
                                ***********************9.8********************************88877777...8************** PP

                       GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                                +veq++ hn++ Fl rf+e+l+yysa+fdsl+a lp+ + +r+k+E++++++ei+n+v+ceg  r erhe++ +Wr+r+++aGF
  Tp57577_TGAC_v2_mRNA38803 396 MVEQDSGHNGPFFLGRFMESLHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPLRMERHEKVDQWRRRMSRAGF 479
                                ************************************************************************************ PP

                       GRAS 325 kpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                + +p++   + qak  l k k  dgy+v ee+g+lvlgWk++p+v+vS+W+
  Tp57577_TGAC_v2_mRNA38803 480 QGAPIKM--VVQAKQWLLKNKiCDGYTVVEEKGCLVLGWKSKPIVAVSCWK 528
                                ****975..56777766666669***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.87126509IPR005202Transcription factor GRAS
PfamPF035143.2E-109152528IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MSHNLYYTTS TFKGEVEYNN DENPLMGCYA SLYPNMPILE NSSNSSSWIV PYSDESETIR  60
DHKKLKRSTI TIPILFANIS NHNSTSINTF FKNSNKSSVN SIPRLHFRDH IRTYKQRYFA  120
AEAVEEAAEE HFNYNNSEAE EEDGTCADGM RLVQLLIACA EAVACRDKSH ASVLLSELKS  180
NALVFGSSFQ RVASCFVQGL TERLTLIQPI GNNSVGSDTK SMMNIMDAAS EEMEEAFKLV  240
YEICPHLQFG HFVANSIILE AFEGESFVHV VDLGMSLGLP HGHQWRGLIQ SLANRSGSQR  300
VLRRLRITAV GLCIARIQVI GKELSIYAKN LGVHLEFSIV EKNLENLKPE DIKVNEKEVL  360
VVNSILQLHC VVKESRGALN SVLQMVHGLS PKVLVMVEQD SGHNGPFFLG RFMESLHYYS  420
AIFDSLDAML PKYDTKRAKI EQFYFAEEIK NIVSCEGPLR MERHEKVDQW RRRMSRAGFQ  480
GAPIKMVVQA KQWLLKNKIC DGYTVVEEKG CLVLGWKSKP IVAVSCWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-6115952726378Protein SCARECROW
5b3h_A8e-6115952725377Protein SCARECROW
5b3h_D8e-6115952725377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA38803
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608883.10.0DELLA protein RGL1
TrEMBLA0A2K3MUK50.0A0A2K3MUK5_TRIPR; Della protein gai1-like protein
STRINGAES910800.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-76RGA-like 1