PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA38549
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 275aa    MW: 30497.2 Da    PI: 6.5079
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA38549genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08138178954
                                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Tp57577_TGAC_v2_mRNA38549 138 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 178
                                699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.951129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-13135199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14135199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.10E-10135183No hitNo description
PfamPF000105.2E-6139178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MENNQNNSSS STSAFTSTWN LEKMETNEQN RIILQQDHHQ IPMSSSLIWP QNNYNNMMIP  60
PPPAPPLPPP SSSGSLSDIL GIHQIDQDVE EQEEELGAMK EMMYKIAAMQ PVDIDPATIR  120
KPKRRNVRIS DDPQSVAARH RRERISEKIR ILQRLVPGGT KMDTASMLDE AIRYVKFLKR  180
QIRLLQSTPQ NHHHQQNQLP FSSQCINSTP PSALLLSPSS GCDAWPFAPN LLLTSATTAT  240
ADLPAGVQFD AGGHSHSHAC DGSSSFNHHE VISE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA38549
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743080.0AC174308.7 Medicago truncatula clone mth2-139i23, complete sequence.
GenBankAC1870440.0AC187044.4 Medicago truncatula clone mth2-135j6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024627548.11e-154transcription factor HEC3
TrEMBLA0A2K3LEF11e-170A0A2K3LEF1_TRIPR; Transcription factor HEC3-like protein
STRINGAET047281e-150(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.12e-47bHLH family protein