PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA38530
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Trihelix
Protein Properties Length: 488aa    MW: 56324.5 Da    PI: 4.1687
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA38530genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix422.5e-13266351186
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                                +Wt++e+  L++a  ++  + +r++l+   W++v++k++e   +er+ +qC+++++ l+k+ykk k   ++   +  ++++yf+
  Tp57577_TGAC_v2_mRNA38530 266 EWTEKETFILLDAWGDRFLQHGRKSLRSDEWQQVAEKVSEVsRVERTGTQCRNRLDTLKKKYKKDKIKFSEM-GGGDKKWVYFK 348
                                5*************************************775168*******************998887775.566679***** PP

                   trihelix  84 qle 86 
                                +++
  Tp57577_TGAC_v2_mRNA38530 349 KMD 351
                                **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-5229237IPR009057Homeodomain-like
PfamPF138375.8E-20266353No hitNo description
PROSITE profilePS500906.26267324IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.2E-5292333IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MDDIEDDSIG SYPPNPNNHG YGYMKHPLRN SSYSHPVANE SSRDYNDVVA VDDDDDVAED  60
EDRLGGEDDI VDVVDDDVDR NRSVQNSLNR VDEDVDMDGD GDGDENDDNN SDDNDQQQNE  120
EYGYVKRHER NSPYSQSFAN EGNNDEDEED EERLVEEEYG GDDDDDVDQI NNVQLSLKQV  180
DEEDNYDEDG DRDENDDDND NDGDNDDKEK SYAIMNNEDE FEWHPKKQKL KSLISTYEFA  240
ARVPTPSAVA TSATKPSFRV RNSLTEWTEK ETFILLDAWG DRFLQHGRKS LRSDEWQQVA  300
EKVSEVSRVE RTGTQCRNRL DTLKKKYKKD KIKFSEMGGG DKKWVYFKKM DKLMSSPPQQ  360
AGFSCGLDSR ESVFMKPRVY VNHANGLDDM KDSPENTESI GVESSDGPRT KKRRKGKSDD  420
NDYSFKLLAD SIQNFGKIYE KIENSKRQQM LELEKMRMEF LNDLEIQKRQ IFEKLQSEIL  480
KLEQRDD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1410414KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA38530
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465529.11e-170stress response protein NST1
RefseqXP_024632983.11e-170stress response protein NST1
TrEMBLA0A2K3PJ110.0A0A2K3PJ11_TRIPR; Kinesin-related protein 4-like
STRINGGLYMA15G01730.11e-139(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.13e-63Trihelix family protein