PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA38522 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C3H | ||||||||
Protein Properties | Length: 171aa MW: 18737.1 Da PI: 9.0878 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.6 | 6.6e-11 | 10 | 34 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt lC f++ GtC +G++C++aHg Tp57577_TGAC_v2_mRNA38522 10 FKTQLCIKFMQ-GTCAHGANCNYAHG 34 69*********.*************9 PP | |||||||
2 | zf-CCCH | 23.6 | 8.8e-08 | 43 | 65 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lCr f+ + +C++G++C+F+H+ Tp57577_TGAC_v2_mRNA38522 43 RLCRMFSSNRHCNFGNNCRFIHS 65 89********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.51E-8 | 8 | 40 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-12 | 8 | 40 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-6 | 9 | 35 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.375 | 9 | 36 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-8 | 10 | 34 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.126 | 39 | 67 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.038 | 41 | 66 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-7 | 42 | 65 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 42 | 66 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-6 | 43 | 65 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MEAERYSAKF KTQLCIKFMQ GTCAHGANCN YAHGYSEIRE TPRLCRMFSS NRHCNFGNNC 60 RFIHSTPHHH DSAIINITPQ QHFVNAEQGT VQNAGCRTVQ TAAPPAAINY GSPSAQNKMV 120 QTSTVPATND PASSSTVPTT KLHKNGPYAG ISMFDKTVMQ KVIGKYADWI * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA38522 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597853.1 | 5e-43 | mRNA decay activator protein ZFP36L2 | ||||
TrEMBL | A0A2Z6M156 | 2e-95 | A0A2Z6M156_TRISU; Uncharacterized protein | ||||
STRING | AES68104 | 2e-42 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15954 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 2e-09 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA38522 |