PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA38410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | bHLH | ||||||||
Protein Properties | Length: 335aa MW: 37001.1 Da PI: 6.6129 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.9 | 0.00043 | 196 | 234 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Tp57577_TGAC_v2_mRNA38410 196 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 234 6677889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.522 | 184 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-10 | 194 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.12E-6 | 194 | 238 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-7 | 194 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MMAGNPNWWN MHPPSLNIPP QYMLGSSSIP FNSLTENSEV PPQSWSQLLF TGVPGEEERL 60 GFNHFEPKNS ENWDVQILNP SSRVPIMDVI KHEVSQNENF YGQQEHHHHH EEFHPNNSGS 120 LGSSWSHMVP VSSPSSHVTS LSSDNNMLDF TYNKLDHSKN LLQDQTSECN SSTINGVNKK 180 ARVQPSSSSQ PPLKVRKEKL GDRITALHQL VSPFGKTDTA SVLLEAIGYI RFLQSQIEAL 240 SSPYLDTAAS KNMMRNQHSV HVERNSVFPE DPGQLLDDTG LKRKGAPIPN QNAGANKAKD 300 LRSRGLCLVP VSCTQHVGSE NGADYWAPAF GSGF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA38410 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT149545 | 0.0 | BT149545.1 Medicago truncatula clone JCVI-FLMt-16P10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597717.2 | 0.0 | transcription factor bHLH68 | ||||
Refseq | XP_024633254.1 | 0.0 | transcription factor bHLH68 | ||||
Swissprot | Q8S3D1 | 6e-75 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | G7IUP4 | 0.0 | G7IUP4_MEDTR; BHLH transcription factor-like protein | ||||
STRING | AES67968 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 4e-77 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA38410 |
Publications ? help Back to Top | |||
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